Sequence Similarity Clusters for the Entities in PDB 1Q3U

Entity #1 | Chains: C,G
loxP DNA dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
loxP DNA dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,E,F
Cre recombinase protein, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 966
95 % 20 23 760
90 % 20 23 791
70 % 20 23 840
50 % 20 23 884
40 % 20 23 907
30 % 20 23 900

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.