Sequence Similarity Clusters for the Entities in PDB 1Q3F

Entity #1 | Chains: B
5'-D(*TP*GP*TP*(NRI)P*AP*TP*CP*TP*T)-3' dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Uracil-DNA glycosylase protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 2714
95 % 9 19 2708 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 9 19 2754
70 % 10 21 1716
50 % 21 43 851
40 % 42 71 526
30 % 43 72 523

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.