Sequence Similarity Clusters for the Entities in PDB 1Q3F

Entity #1 | Chains: B
5'-D(*TP*GP*TP*(NRI)P*AP*TP*CP*TP*T)-3' dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Uracil-DNA glycosylase protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 2925
95 % 9 19 2885 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 9 19 2927
70 % 10 21 1840
50 % 21 43 890
40 % 42 71 561
30 % 43 72 552

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures