Sequence Similarity Clusters for the Entities in PDB 1Q39

Entity #1 | Chains: A
Endonuclease VIII protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 7926
95 % 7 8 7996 Flexibility: Medium
Max RMSD: 8.9, Avg RMSD: 4.5
PDBFlex
90 % 7 8 7930
70 % 7 8 7680
50 % 7 8 7052
40 % 7 8 6515
30 % 76 79 630

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures