Sequence Similarity Clusters for the Entities in PDB 1Q39

Entity #1 | Chains: A
Endonuclease VIII protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 20885
95 % 7 8 8005 Flexibility: Medium
Max RMSD: 8.9, Avg RMSD: 4.8
PDBFlex
90 % 7 8 7947
70 % 7 8 7722
50 % 7 8 7116
40 % 7 8 6606
30 % 69 71 737

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures