Sequence Similarity Clusters for the Entities in PDB 1Q1T

Entity #1 | Chains: A,B
Large T antigen protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24915
95 % 2 2 22033
90 % 2 2 21365
70 % 2 2 19541
50 % 2 2 16876
40 % 2 2 14916
30 % 2 2 12489
Entity #2 | Chains: C
Importin alpha-2 subunit protein, length: 466 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 67 592
95 % 56 67 728 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.6
PDBFlex
90 % 65 78 610
70 % 65 78 654
50 % 79 102 452
40 % 81 106 471
30 % 81 107 461

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures