Sequence Similarity Clusters for the Entities in PDB 1Q1T

Entity #1 | Chains: A,B
Large T antigen protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24879
95 % 2 2 21234
90 % 2 2 20634
70 % 2 2 18948
50 % 2 2 16463
40 % 2 2 14694
30 % 2 2 12599
Entity #2 | Chains: C
Importin alpha-2 subunit protein, length: 466 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 64 559
95 % 53 64 755 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.6
PDBFlex
90 % 60 73 635
70 % 60 73 681
50 % 74 97 446
40 % 76 101 458
30 % 76 101 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures