Sequence Similarity Clusters for the Entities in PDB 1Q1S

Entity #1 | Chains: A,B
Large T antigen protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23810
95 % 1 2 20321
90 % 1 2 19764
70 % 1 2 18224
50 % 1 2 15868
40 % 1 2 14171
30 % 1 2 12150
Entity #2 | Chains: C
Importin alpha-2 subunit protein, length: 466 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 63 530
95 % 41 63 734 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.6
PDBFlex
90 % 47 71 611
70 % 47 71 651
50 % 55 92 468
40 % 57 95 487
30 % 57 95 487

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.