Sequence Similarity Clusters for the Entities in PDB 1Q1S

Entity #1 | Chains: A,B
Large T antigen protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25153
95 % 1 2 21442
90 % 1 2 20825
70 % 1 2 19121
50 % 1 2 16616
40 % 1 2 14828
30 % 1 2 12717
Entity #2 | Chains: C
Importin alpha-2 subunit protein, length: 466 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 65 546
95 % 42 65 741 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.6
PDBFlex
90 % 48 74 636
70 % 48 74 679
50 % 56 98 446
40 % 58 102 460
30 % 58 102 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures