Sequence Similarity Clusters for the Entities in PDB 1Q1S

Entity #1 | Chains: A,B
Large T antigen protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 24151
95 % 1 2 20598
90 % 1 2 20025
70 % 1 2 18442
50 % 1 2 16047
40 % 1 2 14336
30 % 1 2 12289
Entity #2 | Chains: C
Importin alpha-2 subunit protein, length: 466 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 63 544
95 % 41 63 750 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.6
PDBFlex
90 % 47 71 634
70 % 47 71 672
50 % 55 93 465
40 % 57 96 489
30 % 57 96 491

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.