Sequence Similarity Clusters for the Entities in PDB 1Q1J

Entity #1 | Chains: L,M
Fab 447-52D, light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 8292
95 % 4 4 8529
90 % 52 84 229
70 % 222 351 9
50 % 2763 4166 1
40 % 2763 4167 1
30 % 3207 4915 1
Entity #2 | Chains: H,I
Fab 447-52D, heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 8161
95 % 4 4 8418
90 % 4 4 8345
70 % 1336 2016 1
50 % 2764 4166 1
40 % 2764 4167 1
30 % 3208 4915 1
Entity #3 | Chains: P,Q
gp120 V3 peptide protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.