Sequence Similarity Clusters for the Entities in PDB 1Q1J

Entity #1 | Chains: L,M
Fab 447-52D, light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9088
95 % 5 8 3141 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 3.7
PDBFlex
90 % 55 89 243
70 % 1509 2327 1
50 % 3061 4713 1
40 % 3061 4713 1
30 % 3584 5567 1
Entity #2 | Chains: H,I
Fab 447-52D, heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 8948
95 % 4 4 9210 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 4 9115
70 % 1477 2280 2
50 % 3062 4713 1
40 % 3062 4713 1
30 % 3585 5567 1
Entity #3 | Chains: P,Q
gp120 V3 peptide protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.