Sequence Similarity Clusters for the Entities in PDB 1Q1J

Entity #1 | Chains: L,M
Fab 447-52D, light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9880
95 % 7 10 3016 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 3.5
PDBFlex
90 % 63 100 236
70 % 1652 2553 1
50 % 3358 5180 1
40 % 3816 5834 1
30 % 4741 7269 1
Entity #2 | Chains: H,I
Fab 447-52D, heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10854
95 % 4 4 10528 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 4 10383
70 % 1622 2511 2
50 % 3359 5180 1
40 % 3817 5834 1
30 % 4742 7269 1
Entity #3 | Chains: P,Q
gp120 V3 peptide protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures