Sequence Similarity Clusters for the Entities in PDB 1Q1J

Entity #1 | Chains: L,M
Fab 447-52D, light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9472
95 % 5 8 3274 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 3.7
PDBFlex
90 % 62 99 231
70 % 1614 2474 1
50 % 3273 5011 1
40 % 3273 5011 1
30 % 3862 5941 1
Entity #2 | Chains: H,I
Fab 447-52D, heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9326
95 % 4 4 9535 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 4 9439
70 % 1579 2424 2
50 % 3274 5011 1
40 % 3274 5011 1
30 % 3863 5941 1
Entity #3 | Chains: P,Q
gp120 V3 peptide protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures