Sequence Similarity Clusters for the Entities in PDB 1Q16

Entity #1 | Chains: A
Respiratory nitrate reductase 1 alpha chain protein, length: 1247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 7 7269
95 % 3 11 5002
90 % 3 11 5024
70 % 3 11 4968
50 % 3 11 4755
40 % 3 11 4509
30 % 3 11 4121
Entity #2 | Chains: B
Respiratory nitrate reductase 1 beta chain protein, length: 512 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5726
95 % 3 11 5104 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 11 5125
70 % 3 11 5071
50 % 3 11 4839
40 % 3 11 4587
30 % 3 11 4187
Entity #3 | Chains: C
Respiratory nitrate reductase 1 gamma chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12326
95 % 3 10 6731 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 10 6715
70 % 3 10 6542
50 % 3 10 6080
40 % 3 10 5680
30 % 3 10 5087

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.