Sequence Similarity Clusters for the Entities in PDB 1Q16

Entity #1 | Chains: A
Respiratory nitrate reductase 1 alpha chain protein, length: 1247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 7596
95 % 3 11 5277 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 11 5302
70 % 3 11 5221
50 % 3 11 4987
40 % 3 11 4720
30 % 3 11 4317
Entity #2 | Chains: B
Respiratory nitrate reductase 1 beta chain protein, length: 512 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6012
95 % 3 11 5377
90 % 3 11 5399
70 % 3 11 5322
50 % 3 11 5068
40 % 3 11 4795
30 % 3 11 4380
Entity #3 | Chains: C
Respiratory nitrate reductase 1 gamma chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12893
95 % 3 10 7069 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 10 7046
70 % 3 10 6866
50 % 3 10 6359
40 % 3 10 5938
30 % 3 10 5308

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures