Sequence Similarity Clusters for the Entities in PDB 1Q16

Entity #1 | Chains: A
Respiratory nitrate reductase 1 alpha chain protein, length: 1247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 7869
95 % 3 11 5454 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 11 5485
70 % 3 11 5390
50 % 3 11 5133
40 % 3 11 4846
30 % 3 11 4432
Entity #2 | Chains: B
Respiratory nitrate reductase 1 beta chain protein, length: 512 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6219
95 % 3 11 5553
90 % 3 11 5581
70 % 3 11 5486
50 % 3 11 5213
40 % 3 11 4922
30 % 3 11 4496
Entity #3 | Chains: C
Respiratory nitrate reductase 1 gamma chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13332
95 % 3 10 7290 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 10 7271
70 % 3 10 7069
50 % 3 10 6548
40 % 3 10 6109
30 % 3 10 5469

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures