Sequence Similarity Clusters for the Entities in PDB 1Q16

Entity #1 | Chains: A
Respiratory nitrate reductase 1 alpha chain protein, length: 1247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 7726
95 % 3 11 5367 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 11 5391
70 % 3 11 5303
50 % 3 11 5061
40 % 3 11 4786
30 % 3 11 4370
Entity #2 | Chains: B
Respiratory nitrate reductase 1 beta chain protein, length: 512 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6117
95 % 3 11 5468
90 % 3 11 5489
70 % 3 11 5404
50 % 3 11 5143
40 % 3 11 4863
30 % 3 11 4434
Entity #3 | Chains: C
Respiratory nitrate reductase 1 gamma chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13105
95 % 3 10 7177 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 10 7154
70 % 3 10 6961
50 % 3 10 6450
40 % 3 10 6020
30 % 3 10 5382

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures