Sequence Similarity Clusters for the Entities in PDB 1Q16

Entity #1 | Chains: A
Respiratory nitrate reductase 1 alpha chain protein, length: 1247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 7485
95 % 3 11 5198 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 11 5220
70 % 3 11 5151
50 % 3 11 4919
40 % 3 11 4652
30 % 3 11 4257
Entity #2 | Chains: B
Respiratory nitrate reductase 1 beta chain protein, length: 512 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5926
95 % 3 11 5299 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 11 5318
70 % 3 11 5253
50 % 3 11 5002
40 % 3 11 4729
30 % 3 11 4322
Entity #3 | Chains: C
Respiratory nitrate reductase 1 gamma chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 12719
95 % 3 10 6975
90 % 3 10 6953
70 % 3 10 6786
50 % 3 10 6281
40 % 3 10 5863
30 % 3 10 5243

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.