Sequence Similarity Clusters for the Entities in PDB 1Q0W

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein VPS27 protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 51080
95 % 2 2 38184
90 % 2 2 36425
70 % 2 2 32379
50 % 2 2 27687
40 % 2 2 24497
30 % 2 2 20860
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 2209
95 % 406 410 5
90 % 431 437 6
70 % 454 460 8
50 % 474 481 11
40 % 495 505 15
30 % 981 1062 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures