Sequence Similarity Clusters for the Entities in PDB 1Q0W

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein VPS27 protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 50433
95 % 2 2 37719
90 % 2 2 35996
70 % 2 2 32011
50 % 2 2 27394
40 % 2 2 24231
30 % 2 2 20629
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 2179
95 % 392 396 5
90 % 417 423 6
70 % 440 446 8
50 % 460 467 11
40 % 481 491 16
30 % 963 1044 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures