Sequence Similarity Clusters for the Entities in PDB 1Q0W

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein VPS27 protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41614
95 % 2 2 34990
90 % 2 2 33447
70 % 2 2 29803
50 % 2 2 25413
40 % 2 2 22302
30 % 2 2 18600
Entity #2 | Chains: B
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 394 400 4
95 % 418 424 5
90 % 431 437 6
70 % 464 470 8
50 % 484 491 10
40 % 508 518 15
30 % 662 680 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures