Sequence Similarity Clusters for the Entities in PDB 1PZU

Entity #1 | Chains: T,V,X
5'-D(*TP*TP*GP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*A)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: W,Y,Z
5'-D(*AP*AP*TP*GP*GP*AP*AP*AP*TP*TP*CP*CP*TP*C)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: B,D,H,I,L,M
Nuclear factor of activated T-cells, cytoplasmic 2 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 2381
95 % 8 8 2772 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 9.8
PDBFlex
90 % 8 8 2820
70 % 8 8 2803
50 % 8 8 2760
40 % 9 9 2443
30 % 9 9 2331

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures