Sequence Similarity Clusters for the Entities in PDB 1PZ5

Entity #1 | Chains: A
Light chain of Fab (SYA/J6) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 20712
95 % 34 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 38 155 149
70 % 338 2264 1
50 % 692 4587 1
40 % 692 4587 1
30 % 750 5392 1
Entity #2 | Chains: B
Heavy chain of Fab (SYA/J6) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58709
95 % 1 4 17896 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 4 17497
70 % 338 2222 2
50 % 693 4587 1
40 % 693 4587 1
30 % 751 5392 1
Entity #3 | Chains: C
Octapeptide (MDWNMHAA) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.