Sequence Similarity Clusters for the Entities in PDB 1PZ5

Entity #1 | Chains: A
Light chain of Fab (SYA/J6) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21594
95 % 34 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 38 156 149
70 % 364 2392 1
50 % 745 4843 1
40 % 745 4843 1
30 % 810 5705 1
Entity #2 | Chains: B
Heavy chain of Fab (SYA/J6) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60806
95 % 1 4 18624 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 4 18212
70 % 363 2342 2
50 % 746 4843 1
40 % 746 4843 1
30 % 811 5705 1
Entity #3 | Chains: C
Octapeptide (MDWNMHAA) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures