Sequence Similarity Clusters for the Entities in PDB 1PZ5

Entity #1 | Chains: A
Light chain of Fab (SYA/J6) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 19980
95 % 34 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 38 162 147
70 % 395 2553 1
50 % 810 5180 1
40 % 987 5834 1
30 % 1214 7269 1
Entity #2 | Chains: B
Heavy chain of Fab (SYA/J6) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53675
95 % 1 4 18121 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 4 17667
70 % 395 2511 2
50 % 811 5180 1
40 % 988 5834 1
30 % 1215 7269 1
Entity #3 | Chains: C
Octapeptide (MDWNMHAA) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures