Sequence Similarity Clusters for the Entities in PDB 1PYW

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 71 231
95 % 17 78 292 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 19 94 231
70 % 19 94 266
50 % 25 146 173
40 % 25 146 188
30 % 49 304 93
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 38 552
95 % 8 41 683 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 17 73 341
70 % 24 137 163
50 % 25 146 172
40 % 25 146 187
30 % 50 304 93
Entity #3 | Chains: C
9-residue influenza virus hemagglutinin related peptide FVKQNA(MAA)AL protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 8585
95 % 11 29 1318 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 11 29 1339
70 % 11 29 1364
50 % 19 56 479
40 % 20 59 471
30 % 34 88 312

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.