Sequence Similarity Clusters for the Entities in PDB 1PYW

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 69 236
95 % 17 76 310
90 % 19 92 238
70 % 19 92 273
50 % 25 144 180
40 % 25 144 195
30 % 49 300 91
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 545
95 % 8 41 678
90 % 17 73 337
70 % 24 135 166
50 % 25 144 179
40 % 25 144 194
30 % 50 300 91
Entity #3 | Chains: C
9-residue influenza virus hemagglutinin related peptide FVKQNA(MAA)AL protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 8437
95 % 11 29 1301
90 % 11 29 1320
70 % 11 29 1349
50 % 19 56 471
40 % 20 59 465
30 % 34 88 307

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.