Sequence Similarity Clusters for the Entities in PDB 1PYW

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 74 232
95 % 19 81 297 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 21 97 238
70 % 21 97 272
50 % 27 149 180
40 % 27 149 196
30 % 53 310 98
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 38 571
95 % 8 41 721 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 19 76 342
70 % 26 140 164
50 % 27 149 179
40 % 27 149 195
30 % 54 310 98
Entity #3 | Chains: C
9-residue influenza virus hemagglutinin related peptide FVKQNA(MAA)AL protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 8930
95 % 11 29 1365 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 11 29 1389
70 % 11 29 1409
50 % 19 57 493
40 % 20 60 480
30 % 34 89 324

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.