Sequence Similarity Clusters for the Entities in PDB 1PYU

Entity #1 | Chains: A,C
Aspartate 1-decarboxylase beta chain protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7851
95 % 5 6 8411 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 8354
70 % 5 6 8063
50 % 5 6 7428
40 % 5 6 6901
30 % 5 6 6155
Entity #2 | Chains: B,D
Aspartate 1-decarboxylase alfa chain protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 11252
95 % 6 8 5424 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 0.8
PDBFlex
90 % 6 8 5450
70 % 6 8 5352
50 % 6 8 5104
40 % 10 13 3528
30 % 10 13 3300

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures