Sequence Similarity Clusters for the Entities in PDB 1PYU

Entity #1 | Chains: A,C
Aspartate 1-decarboxylase beta chain protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7711
95 % 5 6 8270 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 8218
70 % 5 6 7938
50 % 5 6 7315
40 % 5 6 6804
30 % 5 6 6068
Entity #2 | Chains: B,D
Aspartate 1-decarboxylase alfa chain protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 11063
95 % 6 8 5344 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 0.8
PDBFlex
90 % 6 8 5363
70 % 6 8 5271
50 % 6 8 5036
40 % 10 13 3483
30 % 10 13 3254

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures