Sequence Similarity Clusters for the Entities in PDB 1PYT

Entity #1 | Chains: A
PROCARBOXYPEPTIDASE A protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71147
95 % 1 1 49118
90 % 1 1 46559
70 % 1 1 40787
50 % 1 1 34775
40 % 1 1 30653
30 % 1 1 25875
Entity #2 | Chains: B
PROCARBOXYPEPTIDASE A protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 15167
95 % 30 34 1039 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 30 34 1066
70 % 35 39 928
50 % 39 44 865
40 % 77 83 388
30 % 89 96 343
Entity #3 | Chains: C
PROPROTEINASE E protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58963
95 % 2 2 22999 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.3
PDBFlex
90 % 2 2 22316
70 % 2 2 20466
50 % 116 123 429
40 % 1399 1719 4
30 % 1507 1869 6
Entity #4 | Chains: D
CHYMOTRYPSINOGEN C protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59055
95 % 1 1 41793
90 % 1 1 39900
70 % 2 2 26258
50 % 117 123 429
40 % 1400 1719 4
30 % 1508 1869 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures