Sequence Similarity Clusters for the Entities in PDB 1PYT

Entity #1 | Chains: A
PROCARBOXYPEPTIDASE A protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67798
95 % 1 1 46781
90 % 1 1 44430
70 % 1 1 39086
50 % 1 1 33419
40 % 1 1 29487
30 % 1 1 24875
Entity #2 | Chains: B
PROCARBOXYPEPTIDASE A protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 14332
95 % 30 34 991 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 30 34 1018
70 % 35 39 888
50 % 39 44 827
40 % 77 83 335
30 % 89 96 317
Entity #3 | Chains: C
PROPROTEINASE E protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56175
95 % 2 2 21795 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.3
PDBFlex
90 % 2 2 21181
70 % 2 2 19519
50 % 116 123 394
40 % 1359 1669 4
30 % 1466 1811 6
Entity #4 | Chains: D
CHYMOTRYPSINOGEN C protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56266
95 % 1 1 39814
90 % 1 1 38073
70 % 2 2 25106
50 % 117 123 394
40 % 1360 1669 4
30 % 1467 1811 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.