Sequence Similarity Clusters for the Entities in PDB 1PYT

Entity #1 | Chains: A
PROCARBOXYPEPTIDASE A protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70213
95 % 1 1 48515
90 % 1 1 46014
70 % 1 1 40334
50 % 1 1 34396
40 % 1 1 30330
30 % 1 1 25602
Entity #2 | Chains: B
PROCARBOXYPEPTIDASE A protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 14916
95 % 30 34 1022 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 30 34 1051
70 % 35 39 916
50 % 39 44 858
40 % 77 83 365
30 % 89 96 329
Entity #3 | Chains: C
PROPROTEINASE E protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58154
95 % 2 2 22664 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.3
PDBFlex
90 % 2 2 22005
70 % 2 2 20176
50 % 116 123 418
40 % 1381 1695 4
30 % 1489 1845 6
Entity #4 | Chains: D
CHYMOTRYPSINOGEN C protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58247
95 % 1 1 41233
90 % 1 1 39385
70 % 2 2 25915
50 % 117 123 418
40 % 1382 1695 4
30 % 1490 1845 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.