Sequence Similarity Clusters for the Entities in PDB 1PYT

Entity #1 | Chains: A
PROCARBOXYPEPTIDASE A protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64101
95 % 1 1 41072
90 % 1 1 39130
70 % 1 1 36996
50 % 1 1 31399
40 % 1 1 27518
30 % 1 1 22966
Entity #2 | Chains: B
PROCARBOXYPEPTIDASE A protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 34 877
95 % 30 34 1070 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 30 34 1097
70 % 35 39 974
50 % 39 44 898
40 % 77 83 418
30 % 90 97 372
Entity #3 | Chains: C
PROPROTEINASE E protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53553
95 % 2 2 24640 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.3
PDBFlex
90 % 2 2 23807
70 % 2 2 21627
50 % 116 123 443
40 % 1509 1873 4
30 % 1518 1887 7
Entity #4 | Chains: D
CHYMOTRYPSINOGEN C protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53552
95 % 1 1 44081
90 % 1 1 41938
70 % 2 2 31359
50 % 117 123 443
40 % 1510 1873 4
30 % 1519 1887 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures