Sequence Similarity Clusters for the Entities in PDB 1PYO

Entity #1 | Chains: A,C
Caspase-2 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22577
95 % 1 9 2886 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 1 9 2923
70 % 1 9 2888
50 % 1 9 2849
40 % 1 9 2806
30 % 1 9 2633
Entity #2 | Chains: B,D
Caspase-2 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 2629
95 % 1 9 2905 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 9 2943
70 % 1 9 2903
50 % 1 9 2865
40 % 1 9 2822
30 % 6 83 341
Entity #3 | Chains: E,F
ACETYL-LEU-ASP-GLU-SER-ASJ protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures