Sequence Similarity Clusters for the Entities in PDB 1PYO

Entity #1 | Chains: A,C
Caspase-2 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21709
95 % 1 9 2775 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 1 9 2818
70 % 1 9 2788
50 % 1 9 2752
40 % 1 9 2712
30 % 1 9 2541
Entity #2 | Chains: B,D
Caspase-2 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 2508
95 % 1 9 2799 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 9 2841
70 % 1 9 2806
50 % 1 9 2773
40 % 1 9 2734
30 % 6 83 321
Entity #3 | Chains: E,F
ACETYL-LEU-ASP-GLU-SER-ASJ protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.