Sequence Similarity Clusters for the Entities in PDB 1PYO

Entity #1 | Chains: A,C
Caspase-2 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34241
95 % 1 9 2894 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 1 9 2952
70 % 1 9 2912
50 % 1 9 2875
40 % 1 9 2799
30 % 1 9 2589
Entity #2 | Chains: B,D
Caspase-2 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 2580
95 % 1 9 2899 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 1 9 2956
70 % 1 9 2918
50 % 1 9 2881
40 % 1 9 2805
30 % 10 97 317
Entity #3 | Chains: E,F
ACETYL-LEU-ASP-GLU-SER-ASJ protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures