Sequence Similarity Clusters for the Entities in PDB 1PYI

Entity #1 | Chains: D,E
DNA (5'-D(*TP*CP*GP*GP*CP*AP*AP*TP*TP*GP*CP*CP*GP*A)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (PYRIMIDINE PATHWAY REGULATOR 1) protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46343
95 % 1 1 34603 Flexibility: Medium
Max RMSD: 4.6, Avg RMSD: 4.6
PDBFlex
90 % 1 1 33083
70 % 1 1 29494
50 % 1 1 25231
40 % 1 1 22241
30 % 1 1 18831

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.