Sequence Similarity Clusters for the Entities in PDB 1PYI

Entity #1 | Chains: D,E
DNA (5'-D(*TP*CP*GP*GP*CP*AP*AP*TP*TP*GP*CP*CP*GP*A)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (PYRIMIDINE PATHWAY REGULATOR 1) protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47602
95 % 1 1 35544 Flexibility: Medium
Max RMSD: 4.6, Avg RMSD: 4.6
PDBFlex
90 % 1 1 33941
70 % 1 1 30160
50 % 1 1 25754
40 % 1 1 22695
30 % 1 1 19219

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures