Sequence Similarity Clusters for the Entities in PDB 1PY1

Entity #1 | Chains: A,B,C,D
ADP-ribosylation factor binding protein GGA1 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 2386
95 % 9 10 3037 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 9 10 3084
70 % 12 13 1770
50 % 13 14 1693
40 % 13 14 1712
30 % 13 14 1675
Entity #2 | Chains: E,F,G,H
Beta-secretase protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures