Sequence Similarity Clusters for the Entities in PDB 1PXD

Entity #1 | Chains: A
Agglutinin alpha chain protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 464
95 % 19 31 360 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 20 32 366
70 % 21 36 373
50 % 26 49 264
40 % 26 49 279
30 % 47 93 194
Entity #2 | Chains: B
Agglutinin beta-3 chain protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 6910
95 % 5 10 1643
90 % 7 14 999
70 % 7 14 1033
50 % 7 14 1073
40 % 7 14 1080
30 % 7 14 1063

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.