Sequence Similarity Clusters for the Entities in PDB 1PXD

Entity #1 | Chains: A
Agglutinin alpha chain protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 415
95 % 19 31 322
90 % 20 32 336
70 % 21 36 332
50 % 23 46 258
40 % 23 46 280
30 % 42 87 197
Entity #2 | Chains: B
Agglutinin beta-3 chain protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 6330
95 % 5 10 1512
90 % 7 14 929
70 % 7 14 957
50 % 7 14 1000
40 % 7 14 1016
30 % 7 14 998

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.