Sequence Similarity Clusters for the Entities in PDB 1PXD

Entity #1 | Chains: A
Agglutinin alpha chain protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 614
95 % 17 26 404
90 % 18 27 405
70 % 19 31 393
50 % 21 41 293
40 % 21 41 310
30 % 39 81 203
Entity #2 | Chains: B
Agglutinin beta-3 chain protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 6202
95 % 5 10 1477
90 % 7 14 892
70 % 7 14 930
50 % 7 14 975
40 % 7 14 990
30 % 7 14 979

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.