Sequence Similarity Clusters for the Entities in PDB 1PWV

Entity #1 | Chains: A,B
Lethal factor protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 4243
95 % 5 8 4575 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 5 8 4617
70 % 5 8 4498
50 % 5 8 4317
40 % 5 8 4078
30 % 5 8 3702
Entity #2 | Chains: C,D
LF20 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 19367
95 % 1 2 17668
90 % 1 2 17242
70 % 1 2 15971
50 % 1 2 13979
40 % 1 2 12489
30 % 1 2 10525

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures