Sequence Similarity Clusters for the Entities in PDB 1PVQ

Entity #1 | Chains: C
34-MER dna, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
34-MER dna, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Recombinase CRE protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18632
95 % 19 24 797 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 19 24 825
70 % 19 24 866
50 % 19 24 924
40 % 19 24 951
30 % 19 24 928

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.