Sequence Similarity Clusters for the Entities in PDB 1PVO

Entity #1 | Chains: G,H,J,K,L
5'-R(P*UP*C)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F
Transcription termination factor rho protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 673
95 % 6 10 904 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.7
PDBFlex
90 % 6 10 938
70 % 6 10 970
50 % 7 11 986
40 % 7 11 1010
30 % 7 11 988

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures