Sequence Similarity Clusters for the Entities in PDB 1PVO

Entity #1 | Chains: G,H,J,K,L
5'-R(P*UP*C)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F
Transcription termination factor rho protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 639
95 % 6 10 861 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.7
PDBFlex
90 % 6 10 895
70 % 6 10 926
50 % 7 11 947
40 % 7 11 968
30 % 7 11 944

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.