Sequence Similarity Clusters for the Entities in PDB 1PVO

Entity #1 | Chains: G,H,J,K,L
5'-R(P*UP*C)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F
Transcription termination factor rho protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 768
95 % 6 10 939 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.7
PDBFlex
90 % 6 10 966
70 % 6 10 1003
50 % 7 11 1015
40 % 7 11 1031
30 % 7 11 1024

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures