Sequence Similarity Clusters for the Entities in PDB 1PVI

Entity #1 | Chains: C,D
DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (PVUII (E.C.3.1.21.4)) protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 5532
95 % 6 9 3452 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.8
PDBFlex
90 % 6 9 3510
70 % 6 9 3470
50 % 6 9 3387
40 % 6 9 3282
30 % 6 9 3080

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures