Sequence Similarity Clusters for the Entities in PDB 1PVH

Entity #1 | Chains: A,C
Interleukin-6 receptor beta chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21591
95 % 2 2 18742 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 2 2 18291
70 % 2 2 16913
50 % 2 2 14696
40 % 2 2 13099
30 % 2 2 11228
Entity #2 | Chains: B,D
Leukemia inhibitory factor protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22344
95 % 1 3 14767 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 1 3 14498
70 % 2 5 10052
50 % 2 5 9112
40 % 2 5 8335
30 % 2 5 7344

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures