Sequence Similarity Clusters for the Entities in PDB 1PVC

Entity #1 | Chains: 0
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 11551
95 % 1 9 8313 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 9 8238
70 % 1 36 1580
50 % 4 57 1052
40 % 9 160 294
30 % 9 160 312
Entity #3 | Chains: 2
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 7966
95 % 1 9 8041 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 9 7966
70 % 4 49 1162
50 % 8 160 341
40 % 8 160 367
30 % 13 197 180
Entity #4 | Chains: 3
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 11443
95 % 1 9 8216 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 9 8144
70 % 4 49 1172
50 % 9 169 254
40 % 9 171 279
30 % 14 210 164
Entity #5 | Chains: 4
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 6324
95 % 1 11 6478 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 33 1794
70 % 4 87 594
50 % 7 122 457
40 % 7 123 487
30 % 7 123 487

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures