Sequence Similarity Clusters for the Entities in PDB 1PVC

Entity #1 | Chains: 0
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12290
95 % 1 9 7708 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 9 7654
70 % 1 36 1536
50 % 4 42 1353
40 % 9 159 275
30 % 9 159 284
Entity #3 | Chains: 2
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10379
95 % 1 9 7735 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 9 7684
70 % 4 48 1142
50 % 8 159 307
40 % 8 159 319
30 % 13 194 165
Entity #4 | Chains: 3
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10455
95 % 1 9 7787 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 9 7738
70 % 4 48 1145
50 % 9 168 242
40 % 9 170 260
30 % 14 209 147
Entity #5 | Chains: 4
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 7541
95 % 1 9 8110 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 33 1720
70 % 4 87 567
50 % 7 122 435
40 % 7 123 462
30 % 7 123 459

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.