Sequence Similarity Clusters for the Entities in PDB 1PVC

Entity #1 | Chains: 0
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12509
95 % 1 9 7831 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 9 7775
70 % 1 36 1572
50 % 4 43 1347
40 % 9 160 278
30 % 9 160 289
Entity #3 | Chains: 2
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10559
95 % 1 9 7861 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 9 7806
70 % 4 49 1136
50 % 8 160 318
40 % 8 160 331
30 % 13 195 167
Entity #4 | Chains: 3
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10635
95 % 1 9 7914 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 1 9 7860
70 % 4 49 1138
50 % 9 169 247
40 % 9 171 261
30 % 14 210 149
Entity #5 | Chains: 4
POLIOVIRUS TYPE 3, SABIN STRAIN protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 7679
95 % 1 9 8232 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 33 1765
70 % 4 87 578
50 % 7 122 445
40 % 7 123 470
30 % 7 123 464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures