Sequence Similarity Clusters for the Entities in PDB 1PV4

Entity #1 | Chains: G,H,J,K,L
5'-D(P*CP*C)-3' dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F
Transcription termination factor rho protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 664
95 % 5 10 893 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.7
PDBFlex
90 % 5 10 930
70 % 5 10 964
50 % 6 11 981
40 % 6 11 1006
30 % 6 11 980

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.