Sequence Similarity Clusters for the Entities in PDB 1PV4

Entity #1 | Chains: G,H,J,K,L
5'-D(P*CP*C)-3' dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F
Transcription termination factor rho protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 10 678
95 % 5 10 917
90 % 5 10 951
70 % 5 10 981
50 % 6 11 994
40 % 6 11 1015
30 % 6 11 992

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures