Sequence Similarity Clusters for the Entities in PDB 1PV1

Entity #1 | Chains: A,B,C,D
Hypothetical 33.9 kDa esterase in SMC3-MRPL8 intergenic region protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6788
95 % 4 4 6922 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 4 4 6896
70 % 4 4 6699
50 % 4 4 6234
40 % 10 10 2301
30 % 10 10 2166

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures