Sequence Similarity Clusters for the Entities in PDB 1PUM

Entity #1 | Chains: A
lectin I A chain protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 13903
95 % 6 6 13111 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 11 13 5482
70 % 11 18 3661
50 % 11 18 3581
40 % 150 170 283
30 % 191 212 229
Entity #2 | Chains: B
lectin I B chain protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40404
95 % 11 13 5450 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 11 18 3717
70 % 11 18 3763
50 % 15 26 2272
40 % 33 48 1198
30 % 33 48 1186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures