Sequence Similarity Clusters for the Entities in PDB 1PUF

Entity #1 | Chains: D
5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Homeobox protein Hox-A9 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71860
95 % 1 1 49800
90 % 1 1 47242
70 % 1 1 41419
50 % 1 1 35333
40 % 1 1 31138
30 % 1 1 26276
Entity #4 | Chains: B
Pre-B-cell leukemia transcription factor-1 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72140
95 % 1 1 50039
90 % 1 5 13178
70 % 1 5 12391
50 % 1 5 11050
40 % 1 5 10025
30 % 1 5 8739

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.