Sequence Similarity Clusters for the Entities in PDB 1PUF

Entity #1 | Chains: D
5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Homeobox protein Hox-A9 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62476
95 % 1 1 50832
90 % 1 1 48210
70 % 1 1 42206
50 % 1 1 35813
40 % 1 1 31354
30 % 1 1 26207
Entity #4 | Chains: B
Pre-B-cell leukemia transcription factor-1 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62475
95 % 1 1 50831
90 % 1 5 11578
70 % 1 5 10936
50 % 1 5 9815
40 % 1 5 8882
30 % 1 5 7661

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures