Sequence Similarity Clusters for the Entities in PDB 1PUF

Entity #1 | Chains: D
5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Homeobox protein Hox-A9 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72985
95 % 1 1 50507
90 % 1 1 47876
70 % 1 1 41949
50 % 1 1 35760
40 % 1 1 31506
30 % 1 1 26572
Entity #4 | Chains: B
Pre-B-cell leukemia transcription factor-1 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73268
95 % 1 1 50747
90 % 1 5 13407
70 % 1 5 12603
50 % 1 5 11236
40 % 1 5 10186
30 % 1 5 8876

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures