Sequence Similarity Clusters for the Entities in PDB 1PUB

Entity #1 | Chains: A
GM2-activator protein protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21487
95 % 8 8 3456 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 8 8 3506
70 % 8 9 3206
50 % 8 9 3131
40 % 8 9 3053
30 % 8 9 2860

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.