Sequence Similarity Clusters for the Entities in PDB 1PUB

Entity #1 | Chains: A
GM2-activator protein protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24817
95 % 8 8 3833 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 8 8 3906
70 % 8 9 3531
50 % 8 9 3453
40 % 8 9 3315
30 % 8 9 3060

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures