Sequence Similarity Clusters for the Entities in PDB 1PU5

Entity #1 | Chains: A,B,C
Ganglioside GM2 activator protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 5401
95 % 2 8 3680 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 2 8 3731
70 % 2 9 3414
50 % 2 9 3327
40 % 2 9 3230
30 % 2 9 3027

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures