Sequence Similarity Clusters for the Entities in PDB 1PU5

Entity #1 | Chains: A,B,C
Ganglioside GM2 activator protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 5496
95 % 2 8 3727 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.3
PDBFlex
90 % 2 8 3788
70 % 2 9 3465
50 % 2 9 3382
40 % 2 9 3278
30 % 2 9 3077

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures