Sequence Similarity Clusters for the Entities in PDB 1PTS

Entity #1 | Chains: A,B
STREPTAVIDIN protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 85 96 117
95 % 124 144 71 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.3
PDBFlex
90 % 127 147 72
70 % 127 147 86
50 % 128 148 114
40 % 128 148 137
30 % 156 202 95
Entity #2 | Chains: P
PEPTIDE (FSHPQNT) protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.