Sequence Similarity Clusters for the Entities in PDB 1PTO

Entity #1 | Chains: A,G
PERTUSSIS TOXIN (SUBUNIT S1) protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14238
95 % 3 3 11835 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 11669
70 % 3 3 11031
50 % 3 3 9886
40 % 3 3 8936
30 % 5 5 6545
Entity #2 | Chains: B
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13593
95 % 3 4 12854 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 4 12645
70 % 5 7 5895
50 % 5 7 5529
40 % 5 7 5166
30 % 5 7 4589
Entity #3 | Chains: C,I
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13592
95 % 3 3 12853 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 12644
70 % 6 7 5895
50 % 6 7 5529
40 % 6 7 5166
30 % 6 7 4589
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN (SUBUNIT S4) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5488
95 % 3 3 5778 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 3 5800
70 % 3 3 5670
50 % 3 3 5357
40 % 3 3 5010
30 % 3 3 4473
Entity #5 | Chains: F,L
PERTUSSIS TOXIN (SUBUNIT S5) protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13594
95 % 3 3 12855 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 12646
70 % 3 3 11902
50 % 3 3 10619
40 % 3 3 9571
30 % 3 3 8197
Entity #6 | Chains: H
PERTUSSIS TOXIN (SUBUNIT S2) protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 13593
95 % 4 4 12854 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 4 12645
70 % 7 7 5895
50 % 7 7 5529
40 % 7 7 5166
30 % 7 7 4589

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures