Sequence Similarity Clusters for the Entities in PDB 1PTO

Entity #1 | Chains: A,G
PERTUSSIS TOXIN (SUBUNIT S1) protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 12373
95 % 3 3 11954 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 11788
70 % 3 3 11112
50 % 3 3 9949
40 % 3 3 9026
30 % 3 3 7871
Entity #2 | Chains: B
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12773
95 % 3 4 12257 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 4 12058
70 % 5 7 5595
50 % 5 7 5263
40 % 5 7 4947
30 % 5 7 4468
Entity #3 | Chains: C,I
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 12774
95 % 3 3 12258 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 12059
70 % 6 7 5595
50 % 6 7 5263
40 % 6 7 4947
30 % 6 7 4468
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN (SUBUNIT S4) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5305
95 % 3 3 5951 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 3 5943
70 % 3 3 5808
50 % 3 3 5444
40 % 3 3 5113
30 % 3 3 4595
Entity #5 | Chains: F,L
PERTUSSIS TOXIN (SUBUNIT S5) protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13653
95 % 3 3 12968 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 12756
70 % 3 3 11975
50 % 3 3 10690
40 % 3 3 9697
30 % 3 3 8443
Entity #6 | Chains: H
PERTUSSIS TOXIN (SUBUNIT S2) protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 12773
95 % 4 4 12257 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 4 12058
70 % 7 7 5595
50 % 7 7 5263
40 % 7 7 4947
30 % 7 7 4468

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.