Sequence Similarity Clusters for the Entities in PDB 1PTO

Entity #1 | Chains: A,G
PERTUSSIS TOXIN (SUBUNIT S1) protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13177
95 % 3 3 12686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 12505
70 % 3 3 11797
50 % 3 3 10542
40 % 3 3 9554
30 % 3 3 8338
Entity #2 | Chains: B
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13600
95 % 3 4 13014 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 4 12797
70 % 5 7 5936
50 % 5 7 5572
40 % 5 7 5230
30 % 5 7 4721
Entity #3 | Chains: C,I
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13601
95 % 3 3 13015 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 12798
70 % 6 7 5936
50 % 6 7 5572
40 % 6 7 5230
30 % 6 7 4721
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN (SUBUNIT S4) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5670
95 % 3 3 6312 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 3 6314
70 % 3 3 6152
50 % 3 3 5756
40 % 3 3 5404
30 % 3 3 4852
Entity #5 | Chains: F,L
PERTUSSIS TOXIN (SUBUNIT S5) protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14536
95 % 3 3 13760 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 13528
70 % 3 3 12706
50 % 3 3 11328
40 % 3 3 10258
30 % 3 3 8940
Entity #6 | Chains: H
PERTUSSIS TOXIN (SUBUNIT S2) protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 13600
95 % 4 4 13014 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 4 12797
70 % 7 7 5936
50 % 7 7 5572
40 % 7 7 5230
30 % 7 7 4721

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures