Sequence Similarity Clusters for the Entities in PDB 1PTO

Entity #1 | Chains: A,G
PERTUSSIS TOXIN (SUBUNIT S1) protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 12955
95 % 3 3 12479 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 12303
70 % 3 3 11621
50 % 3 3 10391
40 % 3 3 9422
30 % 3 3 8221
Entity #2 | Chains: B
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13369
95 % 3 4 12802 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 4 12590
70 % 5 7 5849
50 % 5 7 5499
40 % 5 7 5169
30 % 5 7 4657
Entity #3 | Chains: C,I
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13370
95 % 3 3 12803 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 12591
70 % 6 7 5849
50 % 6 7 5499
40 % 6 7 5169
30 % 6 7 4657
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN (SUBUNIT S4) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5571
95 % 3 3 6214 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 3 6211
70 % 3 3 6058
50 % 3 3 5680
40 % 3 3 5337
30 % 3 3 4785
Entity #5 | Chains: F,L
PERTUSSIS TOXIN (SUBUNIT S5) protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14288
95 % 3 3 13536 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 13310
70 % 3 3 12523
50 % 3 3 11165
40 % 3 3 10119
30 % 3 3 8819
Entity #6 | Chains: H
PERTUSSIS TOXIN (SUBUNIT S2) protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 13369
95 % 4 4 12802 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 4 12590
70 % 7 7 5849
50 % 7 7 5499
40 % 7 7 5169
30 % 7 7 4657

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures