Sequence Similarity Clusters for the Entities in PDB 1PTO

Entity #1 | Chains: A,G
PERTUSSIS TOXIN (SUBUNIT S1) protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 12739
95 % 3 3 12296 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 12122
70 % 3 3 11449
50 % 3 3 10239
40 % 3 3 9287
30 % 3 3 8106
Entity #2 | Chains: B
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13153
95 % 3 4 12614 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 4 12404
70 % 5 7 5764
50 % 5 7 5419
40 % 5 7 5096
30 % 5 7 4597
Entity #3 | Chains: C,I
PERTUSSIS TOXIN protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13154
95 % 3 3 12615 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 12405
70 % 6 7 5764
50 % 6 7 5419
40 % 6 7 5096
30 % 6 7 4597
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN (SUBUNIT S4) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 5477
95 % 3 3 6128 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 3 6123
70 % 3 3 5972
50 % 3 3 5598
40 % 3 3 5262
30 % 3 3 4724
Entity #5 | Chains: F,L
PERTUSSIS TOXIN (SUBUNIT S5) protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14056
95 % 3 3 13340 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 13119
70 % 3 3 12344
50 % 3 3 11008
40 % 3 3 9983
30 % 3 3 8702
Entity #6 | Chains: H
PERTUSSIS TOXIN (SUBUNIT S2) protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 13153
95 % 4 4 12614 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 4 12404
70 % 7 7 5764
50 % 7 7 5419
40 % 7 7 5096
30 % 7 7 4597

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures