Sequence Similarity Clusters for the Entities in PDB 1PTJ

Entity #1 | Chains: A,B
NAD(P) transhydrogenase subunit alpha part 1 protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 1246
95 % 10 15 1306 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 10 15 1331
70 % 10 15 1347
50 % 11 16 1325
40 % 19 26 923
30 % 30 38 549
Entity #2 | Chains: C
NAD(P) transhydrogenase subunit beta protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6484
95 % 5 6 7081 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 5 6 7051
70 % 5 6 6874
50 % 8 10 4200
40 % 8 10 4011
30 % 8 10 3704

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.