Sequence Similarity Clusters for the Entities in PDB 1PTJ

Entity #1 | Chains: A,B
NAD(P) transhydrogenase subunit alpha part 1 protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 1285
95 % 10 15 1337 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 10 15 1359
70 % 10 15 1374
50 % 11 16 1356
40 % 19 26 943
30 % 30 38 558
Entity #2 | Chains: C
NAD(P) transhydrogenase subunit beta protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6649
95 % 5 6 7249 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 5 6 7216
70 % 5 6 7018
50 % 8 10 4287
40 % 8 10 4090
30 % 8 10 3774

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures