Sequence Similarity Clusters for the Entities in PDB 1PTJ

Entity #1 | Chains: A,B
NAD(P) transhydrogenase subunit alpha part 1 protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 1325
95 % 10 15 1373 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 10 15 1394
70 % 10 15 1403
50 % 11 16 1383
40 % 19 26 957
30 % 30 38 568
Entity #2 | Chains: C
NAD(P) transhydrogenase subunit beta protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6805
95 % 5 6 7414 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 5 6 7384
70 % 5 6 7174
50 % 8 10 4385
40 % 8 10 4170
30 % 8 10 3854

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures