Sequence Similarity Clusters for the Entities in PDB 1PTJ

Entity #1 | Chains: A,B
NAD(P) transhydrogenase subunit alpha part 1 protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 1230
95 % 10 15 1291 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 10 15 1317
70 % 10 15 1333
50 % 11 16 1312
40 % 19 26 913
30 % 30 38 542
Entity #2 | Chains: C
NAD(P) transhydrogenase subunit beta protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6389
95 % 5 6 6968 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 5 6 6942
70 % 5 6 6733
50 % 8 10 4139
40 % 8 10 3949
30 % 8 10 3642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.