Sequence Similarity Clusters for the Entities in PDB 1PT3

Entity #1 | Chains: C,D,E,F,G,H
5'-GCGATCGC-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Colicin E7 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13385
95 % 11 15 2304 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 11 15 2369
70 % 28 35 938
50 % 31 38 837
40 % 31 38 870
30 % 31 38 853

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.