Sequence Similarity Clusters for the Entities in PDB 1PT3

Entity #1 | Chains: C,D,E,F,G,H
5'-GCGATCGC-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Colicin E7 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13756
95 % 11 15 2368 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 11 15 2435
70 % 28 35 965
50 % 31 38 854
40 % 31 38 884
30 % 31 38 868

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures