Sequence Similarity Clusters for the Entities in PDB 1PSK

Entity #1 | Chains: L
ANTIBODY protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59538
95 % 9 10 3472 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.4
PDBFlex
90 % 57 145 141
70 % 1452 2264 1
50 % 2950 4587 1
40 % 2950 4587 1
30 % 3430 5392 1
Entity #2 | Chains: H
ANTIBODY protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59817
95 % 1 1 41770
90 % 1 1 39730
70 % 1427 2222 2
50 % 2951 4587 1
40 % 2951 4587 1
30 % 3431 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.