Sequence Similarity Clusters for the Entities in PDB 1PRT

Entity #1 | Chains: A,G
PERTUSSIS TOXIN (SUBUNIT S1) protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14569
95 % 1 3 12075 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 11895
70 % 1 3 11277
50 % 1 3 10105
40 % 1 3 9129
30 % 3 5 6709
Entity #2 | Chains: B,H
PERTUSSIS TOXIN (SUBUNIT S2) protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13908
95 % 1 4 13133 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 4 12907
70 % 1 7 6041
50 % 1 7 5669
40 % 1 7 5299
30 % 1 7 4692
Entity #3 | Chains: C,I
PERTUSSIS TOXIN (SUBUNIT S3) protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13907
95 % 1 3 13132 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 12906
70 % 2 7 6041
50 % 2 7 5669
40 % 2 7 5299
30 % 2 7 4692
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN (SUBUNIT S4) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 5638
95 % 1 3 5921 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 3 5934
70 % 1 3 5807
50 % 1 3 5487
40 % 1 3 5133
30 % 1 3 4574
Entity #5 | Chains: F,L
PERTUSSIS TOXIN (SUBUNIT S5) protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13909
95 % 1 3 13134 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 12908
70 % 1 3 12169
50 % 1 3 10841
40 % 1 3 9769
30 % 1 3 8366

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures