Sequence Similarity Clusters for the Entities in PDB 1PRT

Entity #1 | Chains: A,G
PERTUSSIS TOXIN (SUBUNIT S1) protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 12687
95 % 1 3 12253 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 12082
70 % 1 3 11408
50 % 1 3 10202
40 % 1 3 9255
30 % 1 3 8077
Entity #2 | Chains: B,H
PERTUSSIS TOXIN (SUBUNIT S2) protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13099
95 % 1 4 12568 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 4 12359
70 % 1 7 5743
50 % 1 7 5400
40 % 1 7 5077
30 % 1 7 4579
Entity #3 | Chains: C,I
PERTUSSIS TOXIN (SUBUNIT S3) protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13100
95 % 1 3 12569 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 12360
70 % 2 7 5743
50 % 2 7 5400
40 % 2 7 5077
30 % 2 7 4579
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN (SUBUNIT S4) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 5453
95 % 1 3 6104 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 3 6100
70 % 1 3 5952
50 % 1 3 5580
40 % 1 3 5243
30 % 1 3 4705
Entity #5 | Chains: F,L
PERTUSSIS TOXIN (SUBUNIT S5) protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14000
95 % 1 3 13294 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 13071
70 % 1 3 12297
50 % 1 3 10967
40 % 1 3 9947
30 % 1 3 8670

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.