Sequence Similarity Clusters for the Entities in PDB 1PRT

Entity #1 | Chains: A,G
PERTUSSIS TOXIN (SUBUNIT S1) protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14924
95 % 1 3 12396 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 12203
70 % 1 3 11532
50 % 1 3 10312
40 % 1 3 9301
30 % 3 5 6832
Entity #2 | Chains: B,H
PERTUSSIS TOXIN (SUBUNIT S2) protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 14240
95 % 1 4 13469 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 4 13221
70 % 1 7 6163
50 % 1 7 5767
40 % 1 7 5382
30 % 1 7 4772
Entity #3 | Chains: C,I
PERTUSSIS TOXIN (SUBUNIT S3) protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14239
95 % 1 3 13468 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 13220
70 % 2 7 6163
50 % 2 7 5767
40 % 2 7 5382
30 % 2 7 4772
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN (SUBUNIT S4) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 5798
95 % 1 3 6079 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 3 6080
70 % 1 3 5927
50 % 1 3 5580
40 % 1 3 5212
30 % 1 3 4651
Entity #5 | Chains: F,L
PERTUSSIS TOXIN (SUBUNIT S5) protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14241
95 % 1 3 13470 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 13222
70 % 1 3 12427
50 % 1 3 11066
40 % 1 3 9966
30 % 1 3 8522

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures