Sequence Similarity Clusters for the Entities in PDB 1PRT

Entity #1 | Chains: A,G
PERTUSSIS TOXIN (SUBUNIT S1) protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 13216
95 % 1 3 12667
90 % 1 3 12471
70 % 1 3 11782
50 % 1 3 10532
40 % 1 3 9495
30 % 3 5 6952
Entity #2 | Chains: B,H
PERTUSSIS TOXIN (SUBUNIT S2) protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 14549
95 % 1 4 13776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 4 13530
70 % 1 7 6297
50 % 1 7 5876
40 % 1 7 5483
30 % 1 7 4864
Entity #3 | Chains: C,I
PERTUSSIS TOXIN (SUBUNIT S3) protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14548
95 % 1 3 13775 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 13529
70 % 2 7 6297
50 % 2 7 5876
40 % 2 7 5483
30 % 2 7 4864
Entity #4 | Chains: D,E,J,K
PERTUSSIS TOXIN (SUBUNIT S4) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 5935
95 % 1 3 6220 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 3 6217
70 % 1 3 6059
50 % 1 3 5689
40 % 1 3 5311
30 % 1 3 4741
Entity #5 | Chains: F,L
PERTUSSIS TOXIN (SUBUNIT S5) protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14550
95 % 1 3 13777 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 13531
70 % 1 3 12701
50 % 1 3 11309
40 % 1 3 10178
30 % 1 3 8706

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures