Sequence Similarity Clusters for the Entities in PDB 1PRC

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 26 1696
95 % 10 27 2176
90 % 10 27 2228
70 % 10 27 2222
50 % 10 27 2204
40 % 10 29 1889
30 % 10 29 1820
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 26 1715
95 % 10 27 2188 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 27 2241
70 % 10 27 2230
50 % 28 129 378
40 % 28 129 397
30 % 28 129 396
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 1776
95 % 10 27 2178 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 27 2230
70 % 10 27 2224
50 % 28 129 377
40 % 28 129 396
30 % 28 129 395
Entity #4 | Chains: H
PHOTOSYNTHETIC REACTION CENTER protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 1791
95 % 10 27 2190 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 10 27 2244
70 % 10 27 2233
50 % 10 27 2220
40 % 28 129 398
30 % 28 129 397

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures