Sequence Similarity Clusters for the Entities in PDB 1PRC

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 26 1738
95 % 10 27 2220
90 % 10 27 2271
70 % 10 27 2272
50 % 10 27 2258
40 % 10 29 1932
30 % 10 29 1859
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 26 1756
95 % 10 27 2232 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 27 2284
70 % 10 27 2280
50 % 28 129 383
40 % 28 129 410
30 % 28 129 410
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 1818
95 % 10 27 2223 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 27 2274
70 % 10 27 2274
50 % 28 129 382
40 % 28 129 408
30 % 28 129 408
Entity #4 | Chains: H
PHOTOSYNTHETIC REACTION CENTER protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 1833
95 % 10 27 2234 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 10 27 2287
70 % 10 27 2283
50 % 10 27 2274
40 % 28 129 411
30 % 28 129 411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures