Sequence Similarity Clusters for the Entities in PDB 1PRC

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 26 1647
95 % 10 27 2119 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 27 2173
70 % 10 27 2175
50 % 10 27 2157
40 % 10 29 1836
30 % 10 29 1773
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 26 1665
95 % 10 27 2131 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 27 2186
70 % 10 27 2184
50 % 28 129 342
40 % 28 129 369
30 % 28 129 369
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 1725
95 % 10 27 2121 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 27 2175
70 % 10 27 2177
50 % 28 129 341
40 % 28 129 368
30 % 28 129 368
Entity #4 | Chains: H
PHOTOSYNTHETIC REACTION CENTER protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 1735
95 % 10 27 2133 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 10 27 2189
70 % 10 27 2186
50 % 10 27 2172
40 % 28 129 370
30 % 28 129 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.