Sequence Similarity Clusters for the Entities in PDB 1PRC

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 27 1697
95 % 10 28 2136
90 % 10 28 2191
70 % 10 28 2196
50 % 10 28 2186
40 % 10 30 1878
30 % 10 30 1816
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 27 1710
95 % 10 28 2155 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 28 2207
70 % 10 28 2210
50 % 29 131 392
40 % 29 131 413
30 % 29 131 408
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 26 1776
95 % 10 28 2143 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 28 2197
70 % 10 28 2203
50 % 29 131 391
40 % 29 131 412
30 % 29 131 407
Entity #4 | Chains: H
PHOTOSYNTHETIC REACTION CENTER protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 26 1792
95 % 10 28 2162 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 10 28 2214
70 % 10 28 2217
50 % 10 28 2205
40 % 29 131 414
30 % 29 131 409

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures