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An Information Portal to 107049 Biological Macromolecular Structures

RNA polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1PQV
Sequence Clusters for the Sequence Entities in PDB 1PQV
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 101 202
95% 100 101 285
90% 100 101 299
70% 100 101 315
50% 101 102 346
40% 101 102 369
30% 101 102 376
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 107 178
95% 106 107 253
90% 106 107 265
70% 107 108 270
50% 115 116 274
40% 115 116 302
30% 115 116 317
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 103 197
95% 102 103 278
90% 102 103 292
70% 102 103 309
50% 102 103 351
40% 103 104 364
30% 103 104 371
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 106 185
95% 105 106 261
90% 105 106 275
70% 105 106 292
50% 105 106 325
40% 105 106 349
30% 105 106 358
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 309 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43744
95% 1 1 31498
90% 1 1 30273
70% 1 1 27239
50% 1 1 23484
40% 1 1 20839
30% 1 1 17777
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 199
95% 102 103 274
90% 102 103 287
70% 102 103 306
50% 103 104 338
40% 111 112 313
30% 111 112 322
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 101 203
95% 100 101 287
90% 100 101 301
70% 100 101 317
50% 101 102 348
40% 101 102 372
30% 101 102 380
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47051
95% 1 1 33195
90% 1 1 31852
70% 51 52 717
50% 51 52 804
40% 51 52 825
30% 51 52 830
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 108 167
95% 107 108 240
90% 107 108 252
70% 107 108 274
50% 108 109 302
40% 108 109 325
30% 108 109 342
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 105 190
95% 104 105 269
90% 104 105 281
70% 104 105 297
50% 105 107 312
40% 105 107 339
30% 105 107 348
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 53 418
95% 52 53 605
90% 52 53 635
70% 52 53 690
50% 54 55 677
40% 54 55 705
30% 54 55 703
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 107 172
95% 106 108 241
90% 106 108 254
70% 106 108 275
50% 106 108 313
40% 106 108 340
30% 108 110 341
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 201
95% 101 102 284
90% 101 102 298
70% 101 102 314
50% 102 103 344
40% 102 103 367
30% 102 103 374
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.