Sequence Similarity Clusters for the Entities in PDB 1PQV

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 114 209
95 % 113 114 295
90 % 113 114 308
70 % 113 114 336
50 % 123 124 331
40 % 123 124 359
30 % 123 124 366
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 126 127 174
95 % 126 127 240
90 % 126 127 248
70 % 136 137 265
50 % 144 145 260
40 % 144 145 279
30 % 144 145 291
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 116 204
95 % 115 116 291
90 % 115 116 303
70 % 115 116 330
50 % 115 116 369
40 % 116 117 390
30 % 116 117 391
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 123 181
95 % 122 123 253
90 % 122 123 261
70 % 122 123 297
50 % 122 123 325
40 % 122 123 348
30 % 122 123 355
Entity #13 | Chains: S
Transcription elongation factor S-II protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51284
95 % 1 1 36735
90 % 1 1 35179
70 % 1 1 31407
50 % 1 1 26928
40 % 1 1 23792
30 % 7 7 6559
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 115 205
95 % 115 116 286
90 % 115 116 297
70 % 115 116 326
50 % 125 126 328
40 % 133 134 315
30 % 136 137 320
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 111 211
95 % 110 111 303
90 % 110 111 317
70 % 110 111 343
50 % 111 112 388
40 % 111 112 427
30 % 111 112 419
Entity #4 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55096
95 % 1 1 38675
90 % 1 1 36972
70 % 60 61 749
50 % 62 63 770
40 % 62 63 801
30 % 62 63 801
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 127 128 172
95 % 127 128 236
90 % 127 128 246
70 % 127 128 278
50 % 128 129 308
40 % 137 138 306
30 % 137 138 318
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 122 184
95 % 121 122 256
90 % 121 122 262
70 % 121 122 300
50 % 131 133 300
40 % 131 133 321
30 % 131 133 332
Entity #7 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 63 445
95 % 62 63 635
90 % 62 63 671
70 % 62 63 710
50 % 73 74 584
40 % 73 74 621
30 % 73 74 629
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 125 127 173
95 % 126 128 237
90 % 126 128 247
70 % 126 128 279
50 % 126 128 314
40 % 126 128 335
30 % 137 139 314
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 115 207
95 % 114 115 294
90 % 114 115 307
70 % 114 115 335
50 % 115 116 364
40 % 115 116 398
30 % 118 119 384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.