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RNA polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1PQV
Sequence Clusters for the Sequence Entities in PDB 1PQV
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 96 204
95% 95 96 289
90% 95 96 304
70% 95 96 322
50% 96 97 346
40% 96 97 367
30% 96 97 383
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 188
95% 101 102 266
90% 101 102 278
70% 102 103 287
50% 111 112 272
40% 111 112 301
30% 111 112 317
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 98 201
95% 97 98 285
90% 97 98 300
70% 97 98 316
50% 97 98 355
40% 98 99 363
30% 98 99 376
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 101 190
95% 100 101 271
90% 100 101 283
70% 100 101 301
50% 100 101 336
40% 100 101 358
30% 100 101 372
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 309 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42412
95% 1 1 30599
90% 1 1 29433
70% 1 1 26530
50% 1 1 22907
40% 1 1 20326
30% 1 1 17345
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 97 202
95% 97 98 282
90% 97 98 297
70% 97 98 314
50% 98 99 340
40% 107 108 309
30% 107 108 327
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 96 206
95% 95 96 290
90% 95 96 305
70% 95 96 323
50% 96 97 349
40% 96 97 369
30% 96 97 385
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45608
95% 1 1 32249
90% 1 1 30970
70% 49 50 729
50% 49 50 816
40% 49 50 831
30% 49 50 832
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 103 183
95% 102 103 258
90% 102 103 270
70% 102 103 293
50% 103 104 311
40% 103 104 337
30% 103 104 350
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 100 192
95% 99 100 275
90% 99 100 287
70% 99 100 307
50% 100 102 327
40% 100 102 349
30% 100 102 362
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 51 418
95% 50 51 611
90% 50 51 643
70% 50 51 693
50% 52 53 679
40% 52 53 709
30% 52 53 709
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 102 186
95% 101 103 259
90% 101 103 272
70% 101 103 294
50% 101 103 328
40% 101 103 350
30% 103 105 345
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 97 203
95% 96 97 288
90% 96 97 303
70% 96 97 320
50% 97 98 344
40% 97 98 365
30% 97 98 380
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.