Sequence Similarity Clusters for the Entities in PDB 1PQV

Entity #1 | Chains: A
DNA-directed RNA polymerase II largest subunit protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 115 221
95 % 114 115 308
90 % 114 115 324
70 % 114 115 361
50 % 125 126 369
40 % 125 126 400
30 % 125 126 399
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 136 137 178
95 % 136 137 234
90 % 136 137 247
70 % 147 148 261
50 % 155 156 255
40 % 155 156 275
30 % 155 156 280
Entity #11 | Chains: K
DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 117 216
95 % 116 117 300
90 % 116 117 316
70 % 116 117 352
50 % 116 117 413
40 % 118 119 431
30 % 118 119 435
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 133 180
95 % 132 133 242
90 % 132 133 254
70 % 132 133 286
50 % 132 133 322
40 % 132 133 342
30 % 132 133 347
Entity #13 | Chains: S
Transcription elongation factor S-II protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53071
95 % 1 1 38037
90 % 1 1 36402
70 % 1 1 32469
50 % 1 1 27824
40 % 1 1 24576
30 % 7 7 6733
Entity #2 | Chains: B
DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 116 219
95 % 116 117 297
90 % 116 117 312
70 % 116 117 348
50 % 127 128 353
40 % 135 136 326
30 % 138 139 328
Entity #3 | Chains: C
DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 112 225
95 % 111 112 313
90 % 111 112 331
70 % 111 112 369
50 % 113 114 417
40 % 113 114 453
30 % 113 114 449
Entity #4 | Chains: D
DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56988
95 % 1 1 40008
90 % 1 1 38222
70 % 61 62 808
50 % 63 64 817
40 % 63 64 847
30 % 63 64 833
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 138 174
95 % 137 138 231
90 % 137 138 243
70 % 137 138 277
50 % 139 140 304
40 % 148 149 297
30 % 148 149 309
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 132 182
95 % 131 132 245
90 % 131 132 256
70 % 131 132 288
50 % 142 144 296
40 % 142 144 312
30 % 142 144 323
Entity #7 | Chains: G
DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 64 484
95 % 63 64 679
90 % 63 64 708
70 % 63 64 754
50 % 75 76 602
40 % 75 76 632
30 % 75 76 644
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 137 177
95 % 136 138 232
90 % 136 138 244
70 % 136 138 279
50 % 136 138 311
40 % 136 138 325
30 % 148 150 307
Entity #9 | Chains: I
DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 116 220
95 % 115 116 307
90 % 115 116 323
70 % 115 116 360
50 % 117 118 407
40 % 117 118 436
30 % 120 121 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.