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RNA polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1PQV
Sequence Clusters for the Sequence Entities in PDB 1PQV
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 96 203
95% 95 96 287
90% 95 96 300
70% 95 96 316
50% 96 97 339
40% 96 97 361
30% 96 97 374
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 181
95% 101 102 260
90% 101 102 271
70% 102 103 280
50% 102 103 311
40% 110 111 295
30% 110 111 312
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 98 200
95% 97 98 283
90% 97 98 296
70% 97 98 312
50% 97 98 348
40% 98 99 356
30% 98 99 367
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 101 186
95% 100 101 268
90% 100 101 279
70% 100 101 296
50% 100 101 328
40% 100 101 351
30% 100 101 362
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 309 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41994
95% 1 1 30296
90% 1 1 29138
70% 1 1 26263
50% 1 1 22682
40% 1 1 20121
30% 1 1 17170
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 97 201
95% 97 98 280
90% 97 98 293
70% 97 98 310
50% 98 99 332
40% 106 107 302
30% 106 107 319
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 96 205
95% 95 96 288
90% 95 96 301
70% 95 96 318
50% 96 97 342
40% 96 97 363
30% 96 97 376
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45151
95% 1 1 31922
90% 1 1 30656
70% 49 50 699
50% 49 50 758
40% 49 50 770
30% 49 50 776
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 103 176
95% 102 103 250
90% 102 103 261
70% 102 103 287
50% 103 104 301
40% 103 104 328
30% 103 104 339
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 100 188
95% 99 100 272
90% 99 100 283
70% 99 100 302
50% 100 102 316
40% 100 102 339
30% 100 102 351
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 51 413
95% 50 51 605
90% 50 51 636
70% 50 51 667
50% 52 53 638
40% 52 53 664
30% 52 53 666
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 102 180
95% 101 103 251
90% 101 103 263
70% 101 103 288
50% 101 103 317
40% 101 103 340
30% 103 105 336
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 97 202
95% 96 97 286
90% 96 97 299
70% 96 97 315
50% 97 98 336
40% 97 98 358
30% 97 98 371
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.