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RNA polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1PQV
Sequence Clusters for the Sequence Entities in PDB 1PQV
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 101 208
95% 100 101 292
90% 100 101 310
70% 100 101 329
50% 101 102 352
40% 101 102 381
30% 101 102 387
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 107 189
95% 106 107 269
90% 106 107 282
70% 107 108 293
50% 115 116 277
40% 115 116 310
30% 115 116 322
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 103 202
95% 102 103 287
90% 102 103 303
70% 102 103 321
50% 102 103 356
40% 103 104 376
30% 103 104 382
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 106 192
95% 105 106 271
90% 105 106 285
70% 105 106 303
50% 105 106 332
40% 105 106 365
30% 105 106 371
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 309 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45065
95% 1 1 32441
90% 1 1 31157
70% 1 1 27956
50% 1 1 24079
40% 1 1 21362
30% 1 1 18217
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 205
95% 102 103 284
90% 102 103 298
70% 102 103 318
50% 103 104 345
40% 111 112 324
30% 111 112 332
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 101 209
95% 100 101 293
90% 100 101 311
70% 100 101 330
50% 101 102 354
40% 101 102 384
30% 101 102 390
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48452
95% 1 1 34181
90% 1 1 32773
70% 51 52 744
50% 51 52 834
40% 51 52 856
30% 51 52 859
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 108 187
95% 107 108 262
90% 107 108 276
70% 107 108 296
50% 108 109 314
40% 108 109 344
30% 108 109 353
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 105 196
95% 104 105 279
90% 104 105 291
70% 104 105 310
50% 105 107 324
40% 105 107 357
30% 105 107 360
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 53 432
95% 52 53 630
90% 52 53 660
70% 52 53 711
50% 54 55 708
40% 54 55 738
30% 54 55 739
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 107 188
95% 106 108 263
90% 106 108 277
70% 106 108 297
50% 106 108 325
40% 106 108 358
30% 108 110 350
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 207
95% 101 102 291
90% 101 102 309
70% 101 102 327
50% 102 103 350
40% 102 103 379
30% 102 103 385
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.