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RNA polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1PQV
Sequence Clusters for the Sequence Entities in PDB 1PQV
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 96 202
95% 95 96 286
90% 95 96 299
70% 95 96 315
50% 96 97 336
40% 96 97 359
30% 96 97 372
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 180
95% 101 102 258
90% 101 102 268
70% 102 103 278
50% 102 103 310
40% 110 111 294
30% 110 111 311
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 98 199
95% 97 98 281
90% 97 98 294
70% 97 98 310
50% 97 98 345
40% 98 99 353
30% 98 99 365
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 101 185
95% 100 101 266
90% 100 101 277
70% 100 101 294
50% 100 101 325
40% 100 101 348
30% 100 101 359
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 309 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41701
95% 1 1 30103
90% 1 1 28949
70% 1 1 26104
50% 1 1 22553
40% 1 1 20012
30% 1 1 17084
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 97 200
95% 97 98 278
90% 97 98 291
70% 97 98 308
50% 98 99 329
40% 106 107 301
30% 106 107 319
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 96 204
95% 95 96 287
90% 95 96 300
70% 95 96 317
50% 96 97 339
40% 96 97 361
30% 96 97 374
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44838
95% 1 1 31717
90% 1 1 30455
70% 49 50 695
50% 49 50 753
40% 49 50 765
30% 49 50 772
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 103 175
95% 102 103 248
90% 102 103 259
70% 102 103 285
50% 103 104 301
40% 103 104 327
30% 103 104 339
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 100 187
95% 99 100 270
90% 99 100 281
70% 99 100 300
50% 100 102 315
40% 100 102 337
30% 100 102 349
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 51 410
95% 50 51 597
90% 50 51 631
70% 50 51 664
50% 52 53 633
40% 52 53 659
30% 52 53 659
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 102 178
95% 101 103 249
90% 101 103 261
70% 101 103 286
50% 101 103 316
40% 101 103 338
30% 103 105 336
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 97 201
95% 96 97 285
90% 96 97 298
70% 96 97 314
50% 97 98 333
40% 97 98 356
30% 97 98 369
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.