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RNA polymerase II-TFIIS complex
Sequence Clustering and Redundancy Reduction Results
1PQV
Sequence Clusters for the Sequence Entities in PDB 1PQV
Entity #1: Chains: A - DNA-directed RNA polymerase II largest subunit protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 101 204
95% 100 101 288
90% 100 101 302
70% 100 101 318
50% 101 102 348
40% 101 102 374
30% 101 102 381
Entity #10: Chains: J - DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 107 186
95% 106 107 262
90% 106 107 274
70% 107 108 284
50% 115 116 274
40% 115 116 303
30% 115 116 320
Entity #11: Chains: K - DNA-directed RNA polymerase II 13.6 kDa polypeptide protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 103 200
95% 102 103 282
90% 102 103 296
70% 102 103 314
50% 102 103 353
40% 103 104 368
30% 103 104 375
Entity #12: Chains: L - DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 106 189
95% 105 106 264
90% 105 106 278
70% 105 106 296
50% 105 106 328
40% 105 106 355
30% 105 106 364
Entity #13: Chains: S - Transcription elongation factor S-II protein, length: 309 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44044
95% 1 1 31711
90% 1 1 30473
70% 1 1 27421
50% 1 1 23645
40% 1 1 20980
30% 1 1 17893
Entity #2: Chains: B - DNA-directed RNA polymerase II 140 kDa polypeptide protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 201
95% 102 103 278
90% 102 103 291
70% 102 103 310
50% 103 104 340
40% 111 112 314
30% 111 112 326
Entity #3: Chains: C - DNA-directed RNA polymerase II 45 kDa polypeptide protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 101 205
95% 100 101 290
90% 100 101 304
70% 100 101 320
50% 101 102 350
40% 101 102 377
30% 101 102 385
Entity #4: Chains: D - DNA-directed RNA polymerase II 32 kDa polypeptide protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47373
95% 1 1 33419
90% 1 1 32061
70% 51 52 725
50% 51 52 814
40% 51 52 833
30% 51 52 838
Entity #5: Chains: E - DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 108 183
95% 107 108 255
90% 107 108 267
70% 107 108 287
50% 108 109 306
40% 108 109 332
30% 108 109 347
Entity #6: Chains: F - DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 105 193
95% 104 105 273
90% 104 105 285
70% 104 105 302
50% 105 107 318
40% 105 107 347
30% 105 107 354
Entity #7: Chains: G - DNA-directed RNA polymerase II 19 kDa polypeptide protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 53 423
95% 52 53 615
90% 52 53 644
70% 52 53 698
50% 54 55 686
40% 54 55 711
30% 54 55 712
Entity #8: Chains: H - DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 107 185
95% 106 108 256
90% 106 108 269
70% 106 108 288
50% 106 108 319
40% 106 108 348
30% 108 110 345
Entity #9: Chains: I - DNA-directed RNA polymerase II 14.2 kDa polypeptide protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 102 203
95% 101 102 287
90% 101 102 301
70% 101 102 317
50% 102 103 346
40% 102 103 372
30% 102 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.