Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1151
95 % 2 33 1189 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1017
70 % 2 54 618
50 % 2 54 664
40 % 2 54 704
30 % 3 62 613
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 898
95 % 2 36 1028 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1058
70 % 2 39 1004
50 % 2 39 1046
40 % 2 39 1062
30 % 2 39 1044
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1152
95 % 2 34 1159 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1056
70 % 2 55 615
50 % 2 55 662
40 % 2 55 702
30 % 2 55 703
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1153
95 % 2 29 1375 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1146
70 % 2 53 619
50 % 3 61 576
40 % 3 69 466
30 % 3 69 475
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1308
95 % 2 29 1408 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1247
70 % 2 46 737
50 % 3 54 675
40 % 3 61 524
30 % 3 61 522
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1481
95 % 2 25 1745 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1341
70 % 2 45 791
50 % 3 53 711
40 % 3 61 528
30 % 3 61 531
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1138
95 % 2 33 1105 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1060
70 % 2 53 610
50 % 2 53 659
40 % 2 53 700
30 % 2 53 700
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1172
95 % 2 33 1106 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1055
70 % 2 39 1001
50 % 2 53 652
40 % 2 53 695
30 % 2 53 698
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1678
95 % 2 30 1325 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 748
70 % 2 52 624
50 % 2 52 669
40 % 2 52 710
30 % 2 52 713
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35465
95 % 2 16 3005 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2685
70 % 2 17 2669
50 % 2 19 2334
40 % 2 19 2307
30 % 2 19 2170

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 8 H, U Ubiquinol-cytochrome c reductase complex 11 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
3 1PP9 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
4 2FYU 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
5 1NTM 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
6 1L0L 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
7 1NTK 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
8 1SQX 10 H Ubiquinol-cytochrome C reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
9 5KLV 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
10 1NTZ 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
11 1SQV 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
12 1SQB 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
13 1L0N 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
14 1SQP 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
15 1SQQ 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
16 1NU1 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
17 1BE3 8 H CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
18 1BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
19 1BGY 8 H, T CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
20 2BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
21 3BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
22 5XTE 5 E, R Cytochrome b-c1 complex subunit 6, mitochondrial 9606
23 5XTH 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
24 5XTI 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
25 5LUF 8 h, t Cytochrome b-c1 complex subunit 6, mitochondrial 9913
26 5GPN 8 H, T Cytochrome b-c1 complex subunit 6, mitochondrial 9913
27 5J8K 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
28 5J7Y 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
29 5J4Z 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
30 2YBB 16 H, h CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913 1.10.2.2 | Details