Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1122
95 % 2 33 1163 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 992
70 % 2 54 592
50 % 2 54 635
40 % 2 54 674
30 % 3 62 600
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 875
95 % 2 36 1003 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1036
70 % 2 39 975
50 % 2 39 1013
40 % 2 39 1035
30 % 2 39 1018
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1123
95 % 2 34 1136 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1034
70 % 2 55 590
50 % 2 55 633
40 % 2 55 672
30 % 2 55 672
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1124
95 % 2 29 1346 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1120
70 % 2 53 593
50 % 3 61 559
40 % 3 69 454
30 % 3 69 463
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1265
95 % 2 29 1378 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1215
70 % 2 46 712
50 % 3 54 643
40 % 3 61 513
30 % 3 61 509
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1434
95 % 2 25 1699 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1311
70 % 2 45 763
50 % 3 53 692
40 % 3 61 520
30 % 3 61 518
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1108
95 % 2 33 1079 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1038
70 % 2 53 588
50 % 2 53 631
40 % 2 53 671
30 % 2 53 671
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1143
95 % 2 33 1080 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1033
70 % 2 39 972
50 % 2 53 626
40 % 2 53 667
30 % 2 53 668
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1625
95 % 2 30 1294 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 718
70 % 2 52 596
50 % 2 52 639
40 % 2 52 677
30 % 2 52 680
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41703
95 % 2 16 2988 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2765
70 % 2 17 2736
50 % 2 19 2278
40 % 2 19 2255
30 % 2 19 2118

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 8 H, U Ubiquinol-cytochrome c reductase complex 11 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
3 1PP9 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
4 2FYU 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
5 1NTM 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
6 1L0L 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
7 1NTK 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
8 1SQX 10 H Ubiquinol-cytochrome C reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
9 5KLV 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
10 1NTZ 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
11 1SQV 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
12 1SQB 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
13 1L0N 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
14 1SQP 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
15 1SQQ 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
16 1NU1 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
17 1BE3 8 H CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
18 1BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
19 1BGY 8 H, T CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
20 2BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
21 3BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
22 5XTE 5 E, R Cytochrome b-c1 complex subunit 6, mitochondrial 9606
23 5XTH 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
24 5XTI 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
25 5LUF 8 h, t Cytochrome b-c1 complex subunit 6, mitochondrial 9913
26 5GPN 8 H, T Cytochrome b-c1 complex subunit 6, mitochondrial 9913
27 5J8K 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
28 5J7Y 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
29 5J4Z 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
30 2YBB 16 H, h CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913 1.10.2.2 | Details