Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1245
95 % 2 29 1291 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 33 1084
70 % 2 50 644
50 % 2 50 691
40 % 2 50 723
30 % 3 58 607
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1010
95 % 2 32 1154 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 32 1178
70 % 2 49 661
50 % 2 49 706
40 % 2 49 735
30 % 2 49 732
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1246
95 % 2 30 1293 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1157
70 % 2 51 645
50 % 2 51 692
40 % 2 51 724
30 % 2 51 720
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1167
95 % 2 25 1569 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1245
70 % 2 49 647
50 % 3 57 584
40 % 3 65 454
30 % 3 65 453
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1046
95 % 2 29 1303 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1140
70 % 2 46 698
50 % 3 54 622
40 % 3 54 659
30 % 3 62 470
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1674
95 % 2 24 1685 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 30 1296
70 % 2 44 761
50 % 3 52 673
40 % 3 60 497
30 % 3 60 496
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1372
95 % 2 29 1228 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1174
70 % 2 49 659
50 % 2 49 702
40 % 2 49 731
30 % 2 49 729
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1235
95 % 2 29 1229 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1177
70 % 2 35 1076
50 % 2 49 705
40 % 2 49 734
30 % 2 49 731
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1639
95 % 2 30 1230 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 710
70 % 2 48 669
50 % 2 48 714
40 % 2 48 743
30 % 2 48 741
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48724
95 % 2 16 2916 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2709
70 % 2 17 2694
50 % 2 19 2196
40 % 2 19 2190
30 % 2 19 2088

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 8 H, U Ubiquinol-cytochrome c reductase complex 11 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
3 1PP9 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
4 2FYU 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
5 1NTM 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
6 1L0L 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
7 1NTK 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
8 1SQX 10 H Ubiquinol-cytochrome C reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
9 5KLV 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
10 1NTZ 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
11 1SQV 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
12 1SQB 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
13 1L0N 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
14 3TGU 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
15 3L75 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
16 1SQP 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
17 3L71 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
18 3L74 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
19 1SQQ 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
20 3L70 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
21 1NU1 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
22 3H1J 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
23 1BE3 8 H CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
24 4U3F 8 H, U Cytochrome b-c1 complex subunit 6 9031
25 4D6T 8 H, U CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913
26 3L73 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
27 3H1H 8 H, U UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN 9031 1.10.2.2 | Details
28 3L72 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
29 3H1K 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
30 1BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
31 3H1L 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
32 5NMI 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
33 3H1I 8 H, U UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN 9031 1.10.2.2 | Details
34 4D6U 8 H, U CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913
35 1BGY 8 H, T CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
36 2BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
37 3CWB 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031
38 3BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
39 5XTE 5 E, R Cytochrome b-c1 complex subunit 6, mitochondrial 9606
40 5XTH 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
41 5XTI 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
42 5LUF 8 h, t Cytochrome b-c1 complex subunit 6, mitochondrial 9913
43 5GUP 51 0, Ab Cytochrome b-c1 complex subunit 6, mitochondrial 9823
44 5GPN 8 H, T Cytochrome b-c1 complex subunit 6, mitochondrial 9913
45 5J8K 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
46 5J7Y 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
47 5J4Z 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
48 2YBB 16 H, h CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913 1.10.2.2 | Details