Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1158
95 % 2 33 1195 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1021
70 % 2 54 618
50 % 2 54 666
40 % 2 54 708
30 % 3 62 614
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 905
95 % 2 36 1033 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1061
70 % 2 39 1004
50 % 2 39 1049
40 % 2 39 1065
30 % 2 39 1048
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1159
95 % 2 34 1163 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1060
70 % 2 55 616
50 % 2 55 665
40 % 2 55 706
30 % 2 55 708
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1160
95 % 2 29 1379 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1149
70 % 2 53 619
50 % 3 61 577
40 % 3 69 468
30 % 3 69 477
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1315
95 % 2 29 1412 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1257
70 % 2 46 738
50 % 3 54 676
40 % 3 61 525
30 % 3 61 524
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1488
95 % 2 25 1752 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1348
70 % 2 45 792
50 % 3 53 714
40 % 3 61 531
30 % 3 61 535
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1145
95 % 2 33 1108 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1063
70 % 2 53 610
50 % 2 53 662
40 % 2 53 704
30 % 2 53 705
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1177
95 % 2 33 1109 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1059
70 % 2 39 1001
50 % 2 53 657
40 % 2 53 700
30 % 2 53 703
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1683
95 % 2 30 1330 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 753
70 % 2 52 625
50 % 2 52 671
40 % 2 52 713
30 % 2 52 715
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35694
95 % 2 16 3017 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2695
70 % 2 17 2680
50 % 2 19 2343
40 % 2 19 2318
30 % 2 19 2179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 8 H, U Ubiquinol-cytochrome c reductase complex 11 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
3 1PP9 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
4 2FYU 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
5 1NTM 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
6 1L0L 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
7 1NTK 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
8 1SQX 10 H Ubiquinol-cytochrome C reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
9 5KLV 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
10 1NTZ 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
11 1SQV 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
12 1SQB 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
13 1L0N 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
14 5OKD 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
15 3TGU 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
16 3L75 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
17 1SQP 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
18 3L71 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
19 3L74 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
20 1SQQ 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
21 3L70 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
22 1NU1 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
23 3H1J 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
24 1BE3 8 H CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
25 4U3F 8 H, U Cytochrome b-c1 complex subunit 6 9031
26 4D6T 8 H, U CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913
27 3L73 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
28 3H1H 8 H, U UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN 9031 1.10.2.2 | Details
29 3L72 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
30 3H1K 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
31 1BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
32 3H1L 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
33 5NMI 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
34 3H1I 8 H, U UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN 9031 1.10.2.2 | Details
35 4D6U 8 H, U CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913
36 1BGY 8 H, T CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
37 2BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
38 3CWB 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031
39 3BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
40 6FO6 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
41 6FO0 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
42 6FO2 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
43 5XTE 5 E, R Cytochrome b-c1 complex subunit 6, mitochondrial 9606
44 5XTH 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
45 5XTI 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
46 5LUF 8 h, t Cytochrome b-c1 complex subunit 6, mitochondrial 9913
47 5GUP 51 0, Ab Cytochrome b-c1 complex subunit 6, mitochondrial 9823
48 5GPN 8 H, T Cytochrome b-c1 complex subunit 6, mitochondrial 9913
49 5J8K 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
50 5J7Y 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
51 5J4Z 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
52 2YBB 16 H, h CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913 1.10.2.2 | Details