Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1049
95 % 2 33 1107 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 37 962
70 % 2 54 582
50 % 2 54 618
40 % 2 54 656
30 % 3 62 579
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 848
95 % 2 36 1001 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 36 1037
70 % 2 53 592
50 % 2 53 631
40 % 2 53 665
30 % 2 53 655
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1135
95 % 2 34 1108 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1023
70 % 2 55 583
50 % 2 55 620
40 % 2 55 657
30 % 2 55 643
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 948
95 % 2 29 1276 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1089
70 % 2 53 585
50 % 3 61 544
40 % 3 69 442
30 % 3 69 443
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1079
95 % 2 29 1326 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1171
70 % 2 46 711
50 % 3 54 636
40 % 3 54 670
30 % 3 62 479
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1637
95 % 2 25 1684 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1284
70 % 2 45 756
50 % 3 53 691
40 % 3 61 504
30 % 3 61 496
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1097
95 % 2 33 1081 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1035
70 % 2 53 590
50 % 2 53 628
40 % 2 53 662
30 % 2 53 651
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 999
95 % 2 33 1083 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1036
70 % 2 39 965
50 % 2 53 630
40 % 2 53 664
30 % 2 53 654
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1678
95 % 2 30 1262 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 715
70 % 2 52 597
50 % 2 52 639
40 % 2 52 672
30 % 2 52 662
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49637
95 % 2 16 2982 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2769
70 % 2 17 2756
50 % 2 19 2254
40 % 2 19 2242
30 % 2 19 2135

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 8 H, U Ubiquinol-cytochrome c reductase complex 11 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
3 1PP9 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
4 2FYU 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
5 1NTM 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
6 1L0L 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
7 1NTK 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
8 1SQX 10 H Ubiquinol-cytochrome C reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
9 5KLV 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
10 1NTZ 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
11 1SQV 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
12 1SQB 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
13 1L0N 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
14 5OKD 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
15 3TGU 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
16 3L75 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
17 1SQP 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
18 3L71 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
19 3L74 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
20 1SQQ 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
21 3L70 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
22 1NU1 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
23 3H1J 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
24 1BE3 8 H CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
25 4U3F 8 H, U Cytochrome b-c1 complex subunit 6 9031
26 4D6T 8 H, U CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913
27 3L73 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
28 3H1H 8 H, U UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN 9031 1.10.2.2 | Details
29 3L72 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
30 3H1K 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
31 1BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
32 3H1L 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
33 5NMI 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
34 3H1I 8 H, U UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN 9031 1.10.2.2 | Details
35 4D6U 8 H, U CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913
36 1BGY 8 H, T CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
37 2BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
38 3CWB 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031
39 3BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
40 6FO6 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
41 6FO0 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
42 6FO2 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
43 5XTE 5 E, R Cytochrome b-c1 complex subunit 6, mitochondrial 9606
44 5XTH 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
45 5XTI 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
46 5LUF 8 h, t Cytochrome b-c1 complex subunit 6, mitochondrial 9913
47 5GUP 51 0, Ab Cytochrome b-c1 complex subunit 6, mitochondrial 9823
48 5GPN 8 H, T Cytochrome b-c1 complex subunit 6, mitochondrial 9913
49 5J8K 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
50 5J7Y 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
51 5J4Z 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
52 2YBB 16 H, h CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913 1.10.2.2 | Details