Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1224
95 % 2 29 1272 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 33 1067
70 % 2 50 635
50 % 2 50 681
40 % 2 50 710
30 % 3 58 601
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 992
95 % 2 32 1132 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 32 1158
70 % 2 49 651
50 % 2 49 697
40 % 2 49 722
30 % 2 49 720
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1225
95 % 2 30 1273 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1140
70 % 2 51 636
50 % 2 51 682
40 % 2 51 711
30 % 2 51 708
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1149
95 % 2 25 1552 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1226
70 % 2 49 638
50 % 3 57 574
40 % 3 65 449
30 % 3 65 449
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1027
95 % 2 29 1283 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1122
70 % 2 46 688
50 % 3 54 614
40 % 3 54 647
30 % 3 62 468
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1648
95 % 2 24 1660 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 30 1278
70 % 2 44 757
50 % 3 52 666
40 % 3 60 489
30 % 3 60 488
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1348
95 % 2 29 1207 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1155
70 % 2 49 649
50 % 2 49 692
40 % 2 49 718
30 % 2 49 717
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1214
95 % 2 29 1208 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1157
70 % 2 35 1066
50 % 2 49 696
40 % 2 49 721
30 % 2 49 719
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1614
95 % 2 30 1209 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 694
70 % 2 48 659
50 % 2 48 705
40 % 2 48 732
30 % 2 48 730
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48032
95 % 2 16 2875 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2654
70 % 2 17 2639
50 % 2 19 2153
40 % 2 19 2146
30 % 2 19 2055

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 8 H, U Ubiquinol-cytochrome c reductase complex 11 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
3 1PP9 8 H, U Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
4 2FYU 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
5 1NTM 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
6 1L0L 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
7 1NTK 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
8 1SQX 10 H Ubiquinol-cytochrome C reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
9 5KLV 8 H Cytochrome b-c1 complex subunit 6, mitochondrial 9913
10 1NTZ 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
11 1SQV 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
12 1SQB 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
13 1L0N 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
14 3TGU 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
15 3L75 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
16 1SQP 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
17 3L71 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
18 3L74 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
19 1SQQ 8 H Ubiquinol-cytochrome c reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
20 3L70 8 H, U Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii 9031 1.10.2.2 | Details
21 1NU1 8 H Ubiquinol-cytochrome C reductase complex 11 kDa protein 9913 1.10.2.2 | Details
22 3H1J 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
23 1BE3 8 H CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
24 4U3F 8 H, U Cytochrome b-c1 complex subunit 6 9031
25 4D6T 8 H, U CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913
26 3L73 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
27 3H1H 8 H, U UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN 9031 1.10.2.2 | Details
28 3L72 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
29 3H1K 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
30 1BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
31 3H1L 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031 1.10.2.2 | Details
32 5NMI 8 H, U Cytochrome b-c1 complex subunit 6, mitochondrial 9913
33 3H1I 8 H, U UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN 9031 1.10.2.2 | Details
34 4D6U 8 H, U CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913
35 1BGY 8 H, T CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
36 2BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
37 3CWB 8 H, U MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII 9031
38 3BCC 8 H UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
39 5XTE 5 E, R Cytochrome b-c1 complex subunit 6, mitochondrial 9606
40 5XTH 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
41 5XTI 62 AE, AR Cytochrome b-c1 complex subunit 6, mitochondrial UNP RESIDUES 18-91 9606
42 5LUF 8 h, t Cytochrome b-c1 complex subunit 6, mitochondrial 9913
43 5GUP 51 0, Ab Cytochrome b-c1 complex subunit 6, mitochondrial 9823
44 5GPN 8 H, T Cytochrome b-c1 complex subunit 6, mitochondrial 9913
45 5J8K 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
46 5J7Y 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
47 5J4Z 58 AH, AS Cytochrome b-c1 complex subunit 6 9940
48 2YBB 16 H, h CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL 9913 1.10.2.2 | Details