Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1197
95 % 2 33 1223 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1059
70 % 2 54 639
50 % 2 54 689
40 % 2 54 729
30 % 3 62 628
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 1826
95 % 2 36 1070 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1102
70 % 2 39 1026
50 % 2 39 1068
40 % 2 39 1083
30 % 2 39 1065
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1198
95 % 2 34 1191 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1101
70 % 2 55 637
50 % 2 55 687
40 % 2 55 726
30 % 2 55 730
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1199
95 % 2 29 1437 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1194
70 % 2 53 640
50 % 3 61 591
40 % 3 69 479
30 % 3 69 488
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1361
95 % 2 29 1465 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1300
70 % 2 46 760
50 % 3 54 697
40 % 3 61 528
30 % 3 61 529
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1518
95 % 2 25 1778 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1398
70 % 2 45 809
50 % 3 53 732
40 % 3 61 538
30 % 3 61 542
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1184
95 % 2 33 1145 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1104
70 % 2 53 635
50 % 2 53 686
40 % 2 53 725
30 % 2 53 727
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1220
95 % 2 33 1146 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1100
70 % 2 39 1024
50 % 2 53 682
40 % 2 53 721
30 % 2 53 725
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1721
95 % 2 30 1384 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 770
70 % 2 52 648
50 % 2 52 693
40 % 2 52 731
30 % 2 52 738
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36229
95 % 2 16 3071 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2746
70 % 2 17 2730
50 % 2 19 2385
40 % 2 19 2351
30 % 2 19 2207

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 7 G, T Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
2 1PPJ 7 G, T Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
3 1PP9 7 G, T Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
4 2FYU 7 G Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C subunit 7 9913 1.10.2.2 | Details
5 1NTM 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
6 1L0L 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
7 1NTK 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
8 1SQX 6 G Ubiquinol-cytochrome C reductase complex 14 kDa protein subunit 6 9913 1.10.2.2 | Details
9 5KLV 7 G Cytochrome b-c1 complex subunit 8 9913
10 1NTZ 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
11 1SQV 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
12 1SQB 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
13 1L0N 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
14 5OKD 7 G Cytochrome b-c1 complex subunit 8 9913
15 3TGU 7 G, T Mitochondrial ubiquinol-cytochrome c reductase ubiquinone-binding protein qp-c 9031 1.10.2.2 | Details
16 3L75 7 G, T MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C 9031 1.10.2.2 | Details
17 1SQP 7 G Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C subunit 7 9913 1.10.2.2 | Details
18 3L71 7 G, T Mitochondrial ubiquinol-cytochrome c reductase ubiquinone-binding protein qp-c 9031 1.10.2.2 | Details
19 3L74 7 G, T MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C 9031 1.10.2.2 | Details
20 1SQQ 7 G Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C subunit 7 9913 1.10.2.2 | Details
21 3L70 7 G, T Mitochondrial ubiquinol-cytochrome c reductase ubiquinone-binding protein qp-c 9031 1.10.2.2 | Details
22 1NU1 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 1.10.2.2 | Details
23 3H1J 7 G, T MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C 9031 1.10.2.2 | Details
24 1BE3 7 G CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
25 4U3F 7 G, T Mitochondrial ubiquinol-cytochrome c reductase ubiquinone-binding protein qp-c 9031 1.10.2.2 | Details
26 4D6T 7 G, T CYTOCHROME B-C1 COMPLEX SUBUNIT 8 9913
27 1QCR 7 G UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
28 3L73 7 G, T MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C 9031 1.10.2.2 | Details
29 3H1H 7 G, T UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C 9031 1.10.2.2 | Details
30 3L72 7 G, T MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C 9031 1.10.2.2 | Details
31 3H1K 7 G, T MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C 9031 1.10.2.2 | Details
32 1BCC 7 G UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
33 3H1L 7 G, T MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C 9031 1.10.2.2 | Details
34 5NMI 7 G, T Cytochrome b-c1 complex subunit 8 9913
35 3H1I 7 G, T UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C 9031 1.10.2.2 | Details
36 4D6U 7 G, T CYTOCHROME B-C1 COMPLEX SUBUNIT 8 9913
37 1BGY 7 G, S CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
38 2BCC 7 G UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
39 3CWB 7 G, T MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C 9031
40 3BCC 7 G UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
41 6FO6 7 G, T Cytochrome b-c1 complex subunit 8 9913
42 6FO0 7 G, T Cytochrome b-c1 complex subunit 8 9913
43 6FO2 7 G, T Cytochrome b-c1 complex subunit 8 9913
44 5XTE 1 A, N Cytochrome b-c1 complex subunit 8 9606
45 5XTH 58 AA, AN Cytochrome b-c1 complex subunit 8 9606
46 5XTI 58 AA, AN Cytochrome b-c1 complex subunit 8 9606
47 5LUF 7 g, s Cytochrome b-c1 complex subunit 8 9913
48 5GUP 50 Aa, z Cytochrome b-c1 complex subunit 8 9823
49 5GPN 7 G, S Cytochrome b-c1 complex subunit 8 9913
50 5J8K 57 AG, AR COMPLEX III SUBUNIT 8 / QP-C 9940
51 5J7Y 57 AG, AR COMPLEX III SUBUNIT 8 / QP-C 9940
52 5J4Z 57 AG, AR COMPLEX III SUBUNIT 8 / QP-C 9940
53 2YBB 15 G, g CYTOCHROME B-C1 COMPLEX SUBUNIT 8 9913 1.10.2.2 | Details