Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1256
95 % 2 29 1304 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 33 1093
70 % 2 50 646
50 % 2 50 693
40 % 2 50 726
30 % 3 58 609
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1028
95 % 2 32 1163 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 32 1190
70 % 2 49 663
50 % 2 49 708
40 % 2 49 738
30 % 2 49 736
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1257
95 % 2 30 1305 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1167
70 % 2 51 647
50 % 2 51 694
40 % 2 51 727
30 % 2 51 723
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1181
95 % 2 25 1587 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1263
70 % 2 49 649
50 % 3 57 588
40 % 3 65 460
30 % 3 65 455
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1064
95 % 2 29 1316 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1149
70 % 2 46 704
50 % 3 54 624
40 % 3 54 661
30 % 3 62 474
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1693
95 % 2 24 1711 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 30 1312
70 % 2 44 764
50 % 3 52 682
40 % 3 60 502
30 % 3 60 499
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1388
95 % 2 29 1244 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1187
70 % 2 49 661
50 % 2 49 704
40 % 2 49 734
30 % 2 49 733
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1246
95 % 2 29 1245 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1189
70 % 2 35 1085
50 % 2 49 707
40 % 2 49 737
30 % 2 49 735
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1659
95 % 2 30 1246 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 714
70 % 2 48 671
50 % 2 48 716
40 % 2 48 746
30 % 2 48 745
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49068
95 % 2 16 2947 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2733
70 % 2 17 2724
50 % 2 19 2224
40 % 2 19 2217
30 % 2 19 2114

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 6 F, S Ubiquinol-cytochrome c reductase complex 14 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
3 1PP9 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
4 2FYU 6 F Hypothetical protein LOC616871 subunit 6 9913
5 1NTM 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
6 1L0L 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
7 1NTK 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
8 1SQX 8 F Ubiquinol-cytochrome C reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
9 5KLV 6 F Cytochrome b-c1 complex subunit 7 9913
10 1NTZ 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
11 1SQV 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
12 1SQB 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
13 1L0N 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
14 3TGU 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 1.10.2.2 | Details
15 3L75 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
16 1SQP 6 F sub6 subunit 6 9913
17 3L71 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 1.10.2.2 | Details
18 3L74 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
19 1SQQ 6 F Ubiquinol-cytochrome c reductase complex 14 kDa protein subunit 6 9913 1.10.2.2 | Details
20 3L70 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 1.10.2.2 | Details
21 1NU1 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
22 3H1J 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
23 1BE3 6 F CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
24 4U3F 6 F, S Cytochrome b-c1 complex subunit 7 9031
25 4D6T 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
26 1QCR 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
27 3L73 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
28 3H1H 6 F, S UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN 9031 1.10.2.2 | Details
29 3L72 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
30 3H1K 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
31 1BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
32 3H1L 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
33 5NMI 6 F, S Cytochrome b-c1 complex subunit 7 9913
34 3H1I 6 F, S UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN 9031 1.10.2.2 | Details
35 4D6U 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
36 1BGY 6 F, R CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
37 2BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
38 3CWB 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031
39 3BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
40 5XTE 6 F, S Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
41 5XTH 63 AF, AS Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
42 5XTI 63 AF, AS Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
43 5LUF 6 f, r Cytochrome b-c1 complex subunit 7 9913
44 5GUP 49 9, y Cytochrome b-c1 complex subunit 7 9823
45 5GPN 6 F, R Cytochrome b-c1 complex subunit 7 9913
46 5J8K 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
47 5J7Y 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
48 5J4Z 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
49 2YBB 14 F, f CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913 1.10.2.2 | Details