Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1200
95 % 2 33 1225 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1059
70 % 2 54 643
50 % 2 54 692
40 % 2 54 732
30 % 3 62 629
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 1828
95 % 2 36 1072 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1103
70 % 2 39 1028
50 % 2 39 1074
40 % 2 39 1085
30 % 2 39 1064
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1201
95 % 2 34 1192 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1102
70 % 2 55 640
50 % 2 55 690
40 % 2 55 729
30 % 2 55 732
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1202
95 % 2 29 1438 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1196
70 % 2 53 644
50 % 3 61 595
40 % 3 69 482
30 % 3 69 488
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1363
95 % 2 29 1466 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1301
70 % 2 46 763
50 % 3 54 700
40 % 3 61 531
30 % 3 61 530
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1519
95 % 2 25 1778 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1399
70 % 2 45 813
50 % 3 53 734
40 % 3 61 541
30 % 3 61 542
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1186
95 % 2 33 1147 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1105
70 % 2 53 638
50 % 2 53 689
40 % 2 53 728
30 % 2 53 729
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1224
95 % 2 33 1148 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1101
70 % 2 39 1026
50 % 2 53 685
40 % 2 53 724
30 % 2 53 726
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1722
95 % 2 30 1385 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 774
70 % 2 52 652
50 % 2 52 696
40 % 2 52 734
30 % 2 52 739
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36293
95 % 2 16 3076 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2750
70 % 2 17 2735
50 % 2 19 2389
40 % 2 19 2357
30 % 2 19 2208

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 6 F, S Ubiquinol-cytochrome c reductase complex 14 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
3 1PP9 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
4 2FYU 6 F Hypothetical protein LOC616871 subunit 6 9913
5 1NTM 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
6 1L0L 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
7 1NTK 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
8 1SQX 8 F Ubiquinol-cytochrome C reductase complex 11 kDa protein subunit 8 9913 1.10.2.2 | Details
9 5KLV 6 F Cytochrome b-c1 complex subunit 7 9913
10 1NTZ 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
11 1SQV 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
12 1SQB 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
13 1L0N 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
14 5OKD 6 F Cytochrome b-c1 complex subunit 7 9913
15 3TGU 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 1.10.2.2 | Details
16 3L75 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
17 1SQP 6 F sub6 subunit 6 9913
18 3L71 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 1.10.2.2 | Details
19 3L74 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
20 1SQQ 6 F Ubiquinol-cytochrome c reductase complex 14 kDa protein subunit 6 9913 1.10.2.2 | Details
21 3L70 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 1.10.2.2 | Details
22 1NU1 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 1.10.2.2 | Details
23 3H1J 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
24 1BE3 6 F CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
25 4U3F 6 F, S Cytochrome b-c1 complex subunit 7 9031
26 4D6T 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
27 1QCR 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
28 3L73 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
29 3H1H 6 F, S UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN 9031 1.10.2.2 | Details
30 3L72 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
31 3H1K 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
32 1BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
33 3H1L 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 1.10.2.2 | Details
34 5NMI 6 F, S Cytochrome b-c1 complex subunit 7 9913
35 3H1I 6 F, S UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN 9031 1.10.2.2 | Details
36 4D6U 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
37 1BGY 6 F, R CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
38 2BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
39 3CWB 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031
40 3BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
41 6FO6 6 F, S Cytochrome b-c1 complex subunit 7 9913
42 6FO0 6 F, S Cytochrome b-c1 complex subunit 7 9913
43 6FO2 6 F, S Cytochrome b-c1 complex subunit 7 9913
44 5XTE 6 F, S Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
45 5XTH 63 AF, AS Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
46 5XTI 63 AF, AS Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
47 5LUF 6 f, r Cytochrome b-c1 complex subunit 7 9913
48 5GUP 49 9, y Cytochrome b-c1 complex subunit 7 9823
49 5GPN 6 F, R Cytochrome b-c1 complex subunit 7 9913
50 5J8K 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
51 5J7Y 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
52 5J4Z 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
53 2YBB 14 F, f CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913 1.10.2.2 | Details