Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1198
95 % 2 33 1220 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1057
70 % 2 54 637
50 % 2 54 688
40 % 2 54 726
30 % 3 62 625
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 1825
95 % 2 36 1069 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1101
70 % 2 39 1025
50 % 2 39 1068
40 % 2 39 1083
30 % 2 39 1063
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1199
95 % 2 34 1190 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1100
70 % 2 55 635
50 % 2 55 686
40 % 2 55 723
30 % 2 55 728
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1200
95 % 2 29 1435 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1192
70 % 2 53 638
50 % 3 61 590
40 % 3 69 479
30 % 3 69 486
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1362
95 % 2 29 1464 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1299
70 % 2 46 760
50 % 3 54 697
40 % 3 61 527
30 % 3 61 527
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1519
95 % 2 25 1777 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1396
70 % 2 45 809
50 % 3 53 732
40 % 3 61 536
30 % 3 61 539
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1185
95 % 2 33 1144 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1103
70 % 2 53 633
50 % 2 53 685
40 % 2 53 722
30 % 2 53 725
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1221
95 % 2 33 1145 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1099
70 % 2 39 1023
50 % 2 53 681
40 % 2 53 718
30 % 2 53 723
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1721
95 % 2 30 1382 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 770
70 % 2 52 646
50 % 2 52 693
40 % 2 52 730
30 % 2 52 736
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36166
95 % 2 16 3070 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2742
70 % 2 17 2725
50 % 2 19 2383
40 % 2 19 2349
30 % 2 19 2201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 5 E, R Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial 9913 1.10.2.2 | Details
2 1PPJ 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 1.10.2.2 | Details
3 1PP9 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 1.10.2.2 | Details
4 2FYU 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial Iron-sulfur protein 9913 1.10.2.2 | Details
5 1NTM 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 1.10.2.2 | Details
6 1L0L 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 1.10.2.2 | Details
7 1NTK 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, MITOCHONDRIAL 9913 1.10.2.2 | Details
8 1SQX 4 E Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913 1.10.2.2 | Details
9 5KLV 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 1.10.2.2 | Details
10 1NTZ 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 1.10.2.2 | Details
11 1SQV 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 1.10.2.2 | Details
12 1SQB 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 1.10.2.2 | Details
13 1L0N 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 1.10.2.2 | Details
14 5OKD 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 1.10.2.2 | Details
15 1SQP 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 1.10.2.2 | Details
16 1SQQ 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 1.10.2.2 | Details
17 1NU1 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 1.10.2.2 | Details
18 1BE3 5 E CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
19 1QCR 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
20 1BGY 5 E, Q CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
21 5LUF 5 e, q Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 1.10.2.2 | Details
22 5J8K 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 1.10.2.2 | Details
23 5J7Y 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 1.10.2.2 | Details
24 5J4Z 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 1.10.2.2 | Details
25 2YBB 13 E, e CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9913 1.10.2.2 | Details