Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1245
95 % 2 29 1291 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 33 1084
70 % 2 50 644
50 % 2 50 691
40 % 2 50 723
30 % 3 58 607
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1010
95 % 2 32 1154 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 32 1178
70 % 2 49 661
50 % 2 49 706
40 % 2 49 735
30 % 2 49 732
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1246
95 % 2 30 1293 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1157
70 % 2 51 645
50 % 2 51 692
40 % 2 51 724
30 % 2 51 720
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1167
95 % 2 25 1569 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1245
70 % 2 49 647
50 % 3 57 584
40 % 3 65 454
30 % 3 65 453
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1046
95 % 2 29 1303 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1140
70 % 2 46 698
50 % 3 54 622
40 % 3 54 659
30 % 3 62 470
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1674
95 % 2 24 1685 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 30 1296
70 % 2 44 761
50 % 3 52 673
40 % 3 60 497
30 % 3 60 496
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1372
95 % 2 29 1228 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1174
70 % 2 49 659
50 % 2 49 702
40 % 2 49 731
30 % 2 49 729
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1235
95 % 2 29 1229 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1177
70 % 2 35 1076
50 % 2 49 705
40 % 2 49 734
30 % 2 49 731
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1639
95 % 2 30 1230 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 710
70 % 2 48 669
50 % 2 48 714
40 % 2 48 743
30 % 2 48 741
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48724
95 % 2 16 2916 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2709
70 % 2 17 2694
50 % 2 19 2196
40 % 2 19 2190
30 % 2 19 2088

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 5 E, R Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial 9913 1.10.2.2 | Details
2 1PPJ 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 1.10.2.2 | Details
3 1PP9 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 1.10.2.2 | Details
4 2FYU 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial Iron-sulfur protein 9913 1.10.2.2 | Details
5 1NTM 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 1.10.2.2 | Details
6 1L0L 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 1.10.2.2 | Details
7 1NTK 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, MITOCHONDRIAL 9913 1.10.2.2 | Details
8 1SQX 4 E Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913 1.10.2.2 | Details
9 5KLV 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 1.10.2.2 | Details
10 1NTZ 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 1.10.2.2 | Details
11 1SQV 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 1.10.2.2 | Details
12 1SQB 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 1.10.2.2 | Details
13 1L0N 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 1.10.2.2 | Details
14 1SQP 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 1.10.2.2 | Details
15 1SQQ 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 1.10.2.2 | Details
16 1NU1 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 1.10.2.2 | Details
17 1BE3 5 E CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
18 1QCR 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
19 1BGY 5 E, Q CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
20 5LUF 5 e, q Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 1.10.2.2 | Details
21 2YBB 13 E, e CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9913 1.10.2.2 | Details