Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1123
95 % 2 33 1165 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 997
70 % 2 54 594
50 % 2 54 638
40 % 2 54 681
30 % 3 62 601
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 881
95 % 2 36 1006 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1040
70 % 2 39 983
50 % 2 39 1017
40 % 2 39 1039
30 % 2 39 1024
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1124
95 % 2 34 1138 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1038
70 % 2 55 592
50 % 2 55 636
40 % 2 55 678
30 % 2 55 678
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1125
95 % 2 29 1353 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1122
70 % 2 53 595
50 % 3 61 561
40 % 3 69 456
30 % 3 69 464
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1271
95 % 2 29 1384 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1218
70 % 2 46 716
50 % 3 54 646
40 % 3 61 516
30 % 3 61 511
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1442
95 % 2 25 1708 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1319
70 % 2 45 766
50 % 3 53 696
40 % 3 61 521
30 % 3 61 520
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1110
95 % 2 33 1081 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1042
70 % 2 53 590
50 % 2 53 634
40 % 2 53 677
30 % 2 53 676
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1145
95 % 2 33 1082 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1037
70 % 2 39 980
50 % 2 53 629
40 % 2 53 673
30 % 2 53 673
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1636
95 % 2 30 1302 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 721
70 % 2 52 599
50 % 2 52 642
40 % 2 52 684
30 % 2 52 687
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34835
95 % 2 16 2939 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2631
70 % 2 17 2610
50 % 2 19 2284
40 % 2 19 2264
30 % 2 19 2126

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 5 E, R Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial 9913 1.10.2.2 | Details
2 1PPJ 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 1.10.2.2 | Details
3 1PP9 5 E, R Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial 9913 1.10.2.2 | Details
4 2FYU 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial Iron-sulfur protein 9913 1.10.2.2 | Details
5 1NTM 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 1.10.2.2 | Details
6 1L0L 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 1.10.2.2 | Details
7 1NTK 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, MITOCHONDRIAL 9913 1.10.2.2 | Details
8 1SQX 4 E Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913 1.10.2.2 | Details
9 5KLV 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 1.10.2.2 | Details
10 1NTZ 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 1.10.2.2 | Details
11 1SQV 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 1.10.2.2 | Details
12 1SQB 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit 9913 1.10.2.2 | Details
13 1L0N 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT 9913 1.10.2.2 | Details
14 5OKD 5 E Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 1.10.2.2 | Details
15 1SQP 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 1.10.2.2 | Details
16 1SQQ 5 E Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913 1.10.2.2 | Details
17 1NU1 5 E UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial 9913 1.10.2.2 | Details
18 1BE3 5 E CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
19 1QCR 5 E UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
20 1BGY 5 E, Q CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
21 5LUF 5 e, q Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 1.10.2.2 | Details
22 5J8K 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 1.10.2.2 | Details
23 5J7Y 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 1.10.2.2 | Details
24 5J4Z 55 AE, AP Cytochrome b-c1 complex subunit Rieske, mitochondrial 9940 1.10.2.2 | Details
25 2YBB 13 E, e CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9913 1.10.2.2 | Details