Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1256
95 % 2 29 1304 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 33 1093
70 % 2 50 646
50 % 2 50 693
40 % 2 50 726
30 % 3 58 609
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1028
95 % 2 32 1163 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 32 1190
70 % 2 49 663
50 % 2 49 708
40 % 2 49 738
30 % 2 49 736
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1257
95 % 2 30 1305 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1167
70 % 2 51 647
50 % 2 51 694
40 % 2 51 727
30 % 2 51 723
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1181
95 % 2 25 1587 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1263
70 % 2 49 649
50 % 3 57 588
40 % 3 65 460
30 % 3 65 455
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1064
95 % 2 29 1316 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1149
70 % 2 46 704
50 % 3 54 624
40 % 3 54 661
30 % 3 62 474
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1693
95 % 2 24 1711 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 30 1312
70 % 2 44 764
50 % 3 52 682
40 % 3 60 502
30 % 3 60 499
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1388
95 % 2 29 1244 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1187
70 % 2 49 661
50 % 2 49 704
40 % 2 49 734
30 % 2 49 733
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1246
95 % 2 29 1245 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1189
70 % 2 35 1085
50 % 2 49 707
40 % 2 49 737
30 % 2 49 735
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1659
95 % 2 30 1246 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 714
70 % 2 48 671
50 % 2 48 716
40 % 2 48 746
30 % 2 48 745
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49068
95 % 2 16 2947 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2733
70 % 2 17 2724
50 % 2 19 2224
40 % 2 19 2217
30 % 2 19 2114

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 10 J, W Ubiquinol-cytochrome c reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
3 1PP9 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
4 2FYU 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
5 1NTM 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
6 1L0L 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
7 1NTK 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
8 1SQX 11 J Ubiquinol-cytochrome C reductase complex 6.4 kDa protein subunit 11 9913 1.10.2.2 | Details
9 5KLV 10 J Cytochrome b-c1 complex subunit 9 9913
10 1NTZ 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
11 1SQV 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
12 1SQB 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
13 1L0N 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
14 3TGU 10 J, W Mitochondrial ubiquinol-cytochrome c reductase 7.2 kda protein 9031 1.10.2.2 | Details
15 3L75 10 J, W MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN 9031 1.10.2.2 | Details
16 1SQP 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
17 3L71 10 J, W Mitochondrial ubiquinol-cytochrome c reductase 7.2 kda protein 9031 1.10.2.2 | Details
18 3L74 10 J, W MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN 9031 1.10.2.2 | Details
19 1SQQ 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
20 3L70 10 J, W Mitochondrial ubiquinol-cytochrome c reductase 7.2 kda protein 9031 1.10.2.2 | Details
21 1NU1 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
22 3H1J 10 J, W MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN 9031 1.10.2.2 | Details
23 1BE3 10 J CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
24 4U3F 10 J, W Mitochondrial ubiquinol-cytochrome c reductase 7.2 kda protein 9031 1.10.2.2 | Details
25 4D6T 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
26 1QCR 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
27 3L73 10 J, W MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN 9031 1.10.2.2 | Details
28 3H1H 10 J, W UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.2 KDA PROTEIN 9031 1.10.2.2 | Details
29 3L72 10 J, W MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN 9031 1.10.2.2 | Details
30 3H1K 10 J, W MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN 9031 1.10.2.2 | Details
31 1BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
32 3H1L 10 J, W MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN 9031 1.10.2.2 | Details
33 5NMI 9 J, W Cytochrome b-c1 complex subunit 9 9913
34 3H1I 10 J, W UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.2 KDA PROTEIN 9031 1.10.2.2 | Details
35 4D6U 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
36 1BGY 10 J, V CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
37 2BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
38 3CWB 10 J, W MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN 9031
39 3BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9913
40 5XTE 4 D, Q Cytochrome b-c1 complex subunit 9 9606
41 5XTH 61 AD, AQ Cytochrome b-c1 complex subunit 9 9606
42 5XTI 61 AD, AQ Cytochrome b-c1 complex subunit 9 9606
43 5LUF 10 j, v Cytochrome b-c1 complex subunit 9 9913
44 5GUP 52 1, Ac Cytochrome b-c1 complex subunit 9 9823
45 5GPN 10 J, L Cytochrome b-c1 complex subunit 9 9913
46 5J8K 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
47 5J7Y 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
48 5J4Z 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
49 2YBB 18 J, j CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913 1.10.2.2 | Details