Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1151
95 % 2 33 1189 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1017
70 % 2 54 618
50 % 2 54 664
40 % 2 54 704
30 % 3 62 613
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 898
95 % 2 36 1028 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1058
70 % 2 39 1004
50 % 2 39 1046
40 % 2 39 1062
30 % 2 39 1044
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1152
95 % 2 34 1159 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1056
70 % 2 55 615
50 % 2 55 662
40 % 2 55 702
30 % 2 55 703
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1153
95 % 2 29 1375 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1146
70 % 2 53 619
50 % 3 61 576
40 % 3 69 466
30 % 3 69 475
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1308
95 % 2 29 1408 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1247
70 % 2 46 737
50 % 3 54 675
40 % 3 61 524
30 % 3 61 522
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1481
95 % 2 25 1745 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1341
70 % 2 45 791
50 % 3 53 711
40 % 3 61 528
30 % 3 61 531
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1138
95 % 2 33 1105 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1060
70 % 2 53 610
50 % 2 53 659
40 % 2 53 700
30 % 2 53 700
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1172
95 % 2 33 1106 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1055
70 % 2 39 1001
50 % 2 53 652
40 % 2 53 695
30 % 2 53 698
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1678
95 % 2 30 1325 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 748
70 % 2 52 624
50 % 2 52 669
40 % 2 52 710
30 % 2 52 713
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35465
95 % 2 16 3005 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2685
70 % 2 17 2669
50 % 2 19 2334
40 % 2 19 2307
30 % 2 19 2170

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 10 J, W Ubiquinol-cytochrome c reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
3 1PP9 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
4 2FYU 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
5 1NTM 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
6 1L0L 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
7 1NTK 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
8 1SQX 11 J Ubiquinol-cytochrome C reductase complex 6.4 kDa protein subunit 11 9913 1.10.2.2 | Details
9 5KLV 10 J Cytochrome b-c1 complex subunit 9 9913
10 1NTZ 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
11 1SQV 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
12 1SQB 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
13 1L0N 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
14 5OKD 10 J Cytochrome b-c1 complex subunit 9 9913
15 1SQP 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
16 1SQQ 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
17 1NU1 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
18 1BE3 10 J CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
19 4D6T 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
20 1QCR 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
21 1BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
22 5NMI 9 J, W Cytochrome b-c1 complex subunit 9 9913
23 4D6U 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
24 1BGY 10 J, V CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
25 2BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
26 3BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031
27 6FO6 9 J, W Cytochrome b-c1 complex subunit 9 9913
28 6FO0 10 J, W Cytochrome b-c1 complex subunit 9 9913
29 6FO2 10 J, W Cytochrome b-c1 complex subunit 9 9913
30 5XTE 4 D, Q Cytochrome b-c1 complex subunit 9 9606
31 5XTH 61 AD, AQ Cytochrome b-c1 complex subunit 9 9606
32 5XTI 61 AD, AQ Cytochrome b-c1 complex subunit 9 9606
33 5LUF 10 j, v Cytochrome b-c1 complex subunit 9 9913
34 5GUP 52 1, Ac Cytochrome b-c1 complex subunit 9 9823
35 5GPN 10 J, L Cytochrome b-c1 complex subunit 9 9913
36 5J8K 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
37 5J7Y 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
38 5J4Z 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
39 2YBB 18 J, j CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913 1.10.2.2 | Details