Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1241
95 % 2 29 1285 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 33 1081
70 % 2 50 642
50 % 2 50 688
40 % 2 50 717
30 % 3 58 606
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1008
95 % 2 32 1146 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 32 1173
70 % 2 49 659
50 % 2 49 703
40 % 2 49 728
30 % 2 49 727
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1242
95 % 2 30 1286 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1154
70 % 2 51 643
50 % 2 51 689
40 % 2 51 718
30 % 2 51 716
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1163
95 % 2 25 1563 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1241
70 % 2 49 645
50 % 3 57 584
40 % 3 65 453
30 % 3 65 451
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1041
95 % 2 29 1296 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1137
70 % 2 46 697
50 % 3 54 620
40 % 3 54 656
30 % 3 62 470
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1672
95 % 2 24 1675 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 30 1292
70 % 2 44 760
50 % 3 52 671
40 % 3 60 496
30 % 3 60 496
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1367
95 % 2 29 1223 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1170
70 % 2 49 657
50 % 2 49 699
40 % 2 49 725
30 % 2 49 725
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1231
95 % 2 29 1224 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1172
70 % 2 35 1075
50 % 2 49 702
40 % 2 49 727
30 % 2 49 726
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1637
95 % 2 30 1225 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 707
70 % 2 48 667
50 % 2 48 712
40 % 2 48 738
30 % 2 48 737
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48614
95 % 2 16 2908 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2697
70 % 2 17 2682
50 % 2 19 2187
40 % 2 19 2184
30 % 2 19 2083

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 10 J, W Ubiquinol-cytochrome c reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
3 1PP9 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
4 2FYU 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
5 1NTM 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
6 1L0L 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
7 1NTK 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
8 1SQX 11 J Ubiquinol-cytochrome C reductase complex 6.4 kDa protein subunit 11 9913 1.10.2.2 | Details
9 5KLV 10 J Cytochrome b-c1 complex subunit 9 9913
10 1NTZ 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
11 1SQV 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
12 1SQB 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
13 1L0N 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
14 1SQP 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
15 1SQQ 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
16 1NU1 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
17 1BE3 10 J CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
18 4D6T 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
19 5NMI 9 J, W Cytochrome b-c1 complex subunit 9 9913
20 4D6U 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
21 1BGY 10 J, V CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
22 5LUF 10 j, v Cytochrome b-c1 complex subunit 9 9913
23 5GPN 10 J, L Cytochrome b-c1 complex subunit 9 9913
24 5J8K 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
25 5J7Y 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
26 5J4Z 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
27 2YBB 18 J, j CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913 1.10.2.2 | Details