Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1164
95 % 2 33 1205 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1024
70 % 2 54 622
50 % 2 54 669
40 % 2 54 709
30 % 3 62 614
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 1784
95 % 2 36 1041 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1076
70 % 2 39 1004
50 % 2 39 1051
40 % 2 39 1067
30 % 2 39 1048
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1165
95 % 2 34 1174 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1073
70 % 2 55 620
50 % 2 55 668
40 % 2 55 707
30 % 2 55 710
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1166
95 % 2 29 1386 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1170
70 % 2 53 623
50 % 3 61 578
40 % 3 69 474
30 % 3 69 479
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1338
95 % 2 29 1421 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1266
70 % 2 46 741
50 % 3 54 679
40 % 3 61 526
30 % 3 61 523
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1497
95 % 2 25 1757 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1355
70 % 2 45 793
50 % 3 53 717
40 % 3 61 532
30 % 3 61 534
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1150
95 % 2 33 1127 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1078
70 % 2 53 615
50 % 2 53 665
40 % 2 53 705
30 % 2 53 707
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1187
95 % 2 33 1128 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1072
70 % 2 39 1001
50 % 2 53 660
40 % 2 53 701
30 % 2 53 705
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1691
95 % 2 30 1338 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 754
70 % 2 52 628
50 % 2 52 674
40 % 2 52 714
30 % 2 52 717
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35781
95 % 2 16 3023 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2706
70 % 2 17 2687
50 % 2 19 2351
40 % 2 19 2322
30 % 2 19 2184

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 10 J, W Ubiquinol-cytochrome c reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
3 1PP9 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
4 2FYU 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
5 1NTM 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
6 1L0L 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
7 1NTK 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
8 1SQX 11 J Ubiquinol-cytochrome C reductase complex 6.4 kDa protein subunit 11 9913 1.10.2.2 | Details
9 1NTZ 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
10 1SQV 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
11 1SQB 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
12 1L0N 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
13 1SQP 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
14 1SQQ 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
15 1NU1 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
16 1BE3 10 J CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
17 1BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
18 1BGY 10 J, V CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
19 2BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
20 3BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031
21 5LUF 10 j, v Cytochrome b-c1 complex subunit 9 9913
22 5GPN 10 J, L Cytochrome b-c1 complex subunit 9 9913
23 2YBB 18 J, j CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913 1.10.2.2 | Details