Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1124
95 % 2 33 1171 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1001
70 % 2 54 594
50 % 2 54 638
40 % 2 54 681
30 % 3 62 600
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 34 879
95 % 2 36 1011 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1044
70 % 2 39 985
50 % 2 39 1020
40 % 2 39 1041
30 % 2 39 1026
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1125
95 % 2 34 1144 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1042
70 % 2 55 592
50 % 2 55 636
40 % 2 55 679
30 % 2 55 677
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1126
95 % 2 29 1355 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1129
70 % 2 53 595
50 % 3 61 561
40 % 3 69 456
30 % 3 69 464
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1272
95 % 2 29 1387 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1224
70 % 2 46 724
50 % 3 54 647
40 % 3 61 516
30 % 3 61 510
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1446
95 % 2 25 1711 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1322
70 % 2 45 777
50 % 3 53 697
40 % 3 61 521
30 % 3 61 519
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1111
95 % 2 33 1088 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1046
70 % 2 53 590
50 % 2 53 635
40 % 2 53 678
30 % 2 53 675
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1146
95 % 2 33 1089 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1041
70 % 2 39 982
50 % 2 53 630
40 % 2 53 674
30 % 2 53 673
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1640
95 % 2 30 1305 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 730
70 % 2 52 599
50 % 2 52 643
40 % 2 52 684
30 % 2 52 687
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34883
95 % 2 16 2959 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2647
70 % 2 17 2625
50 % 2 19 2294
40 % 2 19 2273
30 % 2 19 2131

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 10 J, W Ubiquinol-cytochrome c reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
2 1PPJ 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
3 1PP9 10 J, W Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
4 2FYU 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
5 1NTM 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
6 1L0L 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
7 1NTK 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
8 1SQX 11 J Ubiquinol-cytochrome C reductase complex 6.4 kDa protein subunit 11 9913 1.10.2.2 | Details
9 5KLV 10 J Cytochrome b-c1 complex subunit 9 9913
10 1NTZ 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
11 1SQV 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
12 1SQB 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
13 1L0N 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
14 5OKD 10 J Cytochrome b-c1 complex subunit 9 9913
15 1SQP 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
16 1SQQ 10 J Ubiquinol-cytochrome c reductase complex 7.2 kDa protein subunit 10 9913 1.10.2.2 | Details
17 1NU1 10 J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein 9913 1.10.2.2 | Details
18 1BE3 10 J CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
19 4D6T 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
20 1BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
21 5NMI 9 J, W Cytochrome b-c1 complex subunit 9 9913
22 4D6U 9 J, W CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913
23 1BGY 10 J, V CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
24 2BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
25 3BCC 10 J UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031
26 6FO6 9 J, W Cytochrome b-c1 complex subunit 9 9913
27 6FO0 10 J, W Cytochrome b-c1 complex subunit 9 9913
28 6FO2 10 J, W Cytochrome b-c1 complex subunit 9 9913
29 5LUF 10 j, v Cytochrome b-c1 complex subunit 9 9913
30 5GPN 10 J, L Cytochrome b-c1 complex subunit 9 9913
31 5J8K 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
32 5J7Y 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
33 5J4Z 60 AJ, AU COMPLEX III SUBUNIT 9 / 7.2KDA 9940
34 2YBB 18 J, j CYTOCHROME B-C1 COMPLEX SUBUNIT 9 9913 1.10.2.2 | Details