Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1197
95 % 2 33 1223 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1059
70 % 2 54 639
50 % 2 54 689
40 % 2 54 729
30 % 3 62 628
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 1826
95 % 2 36 1070 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1102
70 % 2 39 1026
50 % 2 39 1068
40 % 2 39 1083
30 % 2 39 1065
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1198
95 % 2 34 1191 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1101
70 % 2 55 637
50 % 2 55 687
40 % 2 55 726
30 % 2 55 730
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1199
95 % 2 29 1437 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1194
70 % 2 53 640
50 % 3 61 591
40 % 3 69 479
30 % 3 69 488
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1361
95 % 2 29 1465 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1300
70 % 2 46 760
50 % 3 54 697
40 % 3 61 528
30 % 3 61 529
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1518
95 % 2 25 1778 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1398
70 % 2 45 809
50 % 3 53 732
40 % 3 61 538
30 % 3 61 542
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1184
95 % 2 33 1145 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1104
70 % 2 53 635
50 % 2 53 686
40 % 2 53 725
30 % 2 53 727
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1220
95 % 2 33 1146 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1100
70 % 2 39 1024
50 % 2 53 682
40 % 2 53 721
30 % 2 53 725
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1721
95 % 2 30 1384 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 770
70 % 2 52 648
50 % 2 52 693
40 % 2 52 731
30 % 2 52 738
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36229
95 % 2 16 3071 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2746
70 % 2 17 2730
50 % 2 19 2385
40 % 2 19 2351
30 % 2 19 2207

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 1 A, N Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
2 1PPJ 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
3 1PP9 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
4 2FYU 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial Core1 9913 1.10.2.2 | Details
5 1NTM 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
6 1L0L 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
7 1NTK 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
8 1SQX 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
9 5KLV 1 A Cytochrome b-c1 complex subunit 1, mitochondrial 9913
10 1NTZ 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
11 1SQV 1 A Ubiquinol-cytochrome c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
12 1SQB 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
13 1L0N 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
14 5OKD 1 A Cytochrome b-c1 complex subunit 1, mitochondrial 9913
15 1SQP 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
16 1SQQ 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
17 1NU1 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
18 1BE3 1 A CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
19 4D6T 1 A, N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
20 1QCR 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
21 5NMI 1 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
22 4D6U 1 A CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
23 4D6U 10 N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
24 1BGY 1 A, M CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
25 6FO6 2 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
26 6FO0 1 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
27 6FO2 1 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
28 5XTE 11 L, Y Cytochrome b-c1 complex subunit 1, mitochondrial 9606
29 5XTH 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
30 5XTI 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
31 5LUF 1 c, l Cytochrome b-c1 complex subunit 1, mitochondrial 9913
32 5GUP 45 5, u Cytochrome b-c1 complex subunit 1, mitochondrial 9823
33 5GPN 1 A, M Cytochrome b-c1 complex subunit 1, mitochondrial 9913
34 5J8K 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
35 5J7Y 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
36 5J4Z 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
37 2YBB 9 A, a CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913 1.10.2.2 | Details