Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1225
95 % 2 29 1273 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 33 1068
70 % 2 50 635
50 % 2 50 681
40 % 2 50 710
30 % 3 58 602
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 994
95 % 2 32 1132 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 32 1158
70 % 2 49 651
50 % 2 49 697
40 % 2 49 722
30 % 2 49 721
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1226
95 % 2 30 1274 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1140
70 % 2 51 636
50 % 2 51 682
40 % 2 51 711
30 % 2 51 709
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1151
95 % 2 25 1554 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1227
70 % 2 49 638
50 % 3 57 575
40 % 3 65 449
30 % 3 65 449
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1028
95 % 2 29 1284 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1122
70 % 2 46 688
50 % 3 54 615
40 % 3 54 649
30 % 3 62 470
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1648
95 % 2 24 1661 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 30 1279
70 % 2 44 757
50 % 3 52 666
40 % 3 60 490
30 % 3 60 488
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1348
95 % 2 29 1207 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1155
70 % 2 49 649
50 % 2 49 692
40 % 2 49 718
30 % 2 49 718
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1215
95 % 2 29 1208 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1157
70 % 2 35 1066
50 % 2 49 696
40 % 2 49 721
30 % 2 49 720
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1614
95 % 2 30 1209 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 695
70 % 2 48 659
50 % 2 48 705
40 % 2 48 732
30 % 2 48 731
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48079
95 % 2 16 2876 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2656
70 % 2 17 2641
50 % 2 19 2153
40 % 2 19 2146
30 % 2 19 2057

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 1 A, N Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
2 1PPJ 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
3 1PP9 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
4 2FYU 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial Core1 9913 1.10.2.2 | Details
5 1NTM 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
6 1L0L 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
7 1NTK 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
8 1SQX 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
9 5KLV 1 A Cytochrome b-c1 complex subunit 1, mitochondrial 9913
10 1NTZ 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
11 1SQV 1 A Ubiquinol-cytochrome c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
12 1SQB 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
13 1L0N 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
14 3TGU 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
15 3L75 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
16 1SQP 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
17 3L71 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
18 3L74 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
19 1SQQ 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
20 3L70 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
21 1NU1 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
22 3H1J 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
23 1BE3 1 A CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
24 4U3F 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
25 4D6T 1 A, N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
26 1QCR 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
27 3L73 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
28 3H1H 1 A, N UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL 9031 1.10.2.2 | Details
29 3L72 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
30 3H1K 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
31 1BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
32 3H1L 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
33 5NMI 1 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
34 3H1I 1 A, N UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL 9031 1.10.2.2 | Details
35 4D6U 1 A CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
36 4D6U 10 N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
37 1BGY 1 A, M CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
38 2BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
39 3CWB 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031
40 3BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
41 5XTE 11 L, Y Cytochrome b-c1 complex subunit 1, mitochondrial 9606
42 5XTH 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
43 5XTI 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
44 5LUF 1 c, l Cytochrome b-c1 complex subunit 1, mitochondrial 9913
45 5GUP 45 5, u Cytochrome b-c1 complex subunit 1, mitochondrial 9823
46 5GPN 1 A, M Cytochrome b-c1 complex subunit 1, mitochondrial 9913
47 5J8K 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
48 5J7Y 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
49 5J4Z 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
50 2YBB 9 A, a CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913 1.10.2.2 | Details