Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1253
95 % 2 29 1303 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 33 1092
70 % 2 50 645
50 % 2 50 692
40 % 2 50 725
30 % 3 58 609
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1025
95 % 2 32 1160 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 32 1187
70 % 2 49 662
50 % 2 49 707
40 % 2 49 737
30 % 2 49 734
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1254
95 % 2 30 1304 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1165
70 % 2 51 646
50 % 2 51 693
40 % 2 51 726
30 % 2 51 722
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1177
95 % 2 25 1586 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1260
70 % 2 49 648
50 % 3 57 587
40 % 3 65 459
30 % 3 65 455
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1059
95 % 2 29 1314 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1147
70 % 2 46 703
50 % 3 54 624
40 % 3 54 661
30 % 3 62 474
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1688
95 % 2 24 1708 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 30 1311
70 % 2 44 763
50 % 3 52 681
40 % 3 60 500
30 % 3 60 498
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1386
95 % 2 29 1242 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1183
70 % 2 49 660
50 % 2 49 703
40 % 2 49 733
30 % 2 49 731
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1243
95 % 2 29 1243 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1186
70 % 2 35 1084
50 % 2 49 706
40 % 2 49 736
30 % 2 49 733
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1655
95 % 2 30 1244 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 713
70 % 2 48 670
50 % 2 48 715
40 % 2 48 745
30 % 2 48 743
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49001
95 % 2 16 2941 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2729
70 % 2 17 2717
50 % 2 19 2218
40 % 2 19 2212
30 % 2 19 2108

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 1 A, N Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
2 1PPJ 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
3 1PP9 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
4 2FYU 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial Core1 9913 1.10.2.2 | Details
5 1NTM 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
6 1L0L 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
7 1NTK 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
8 1SQX 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
9 5KLV 1 A Cytochrome b-c1 complex subunit 1, mitochondrial 9913
10 1NTZ 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
11 1SQV 1 A Ubiquinol-cytochrome c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
12 1SQB 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
13 1L0N 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
14 3TGU 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
15 3L75 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
16 1SQP 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
17 3L71 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
18 3L74 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
19 1SQQ 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
20 3L70 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
21 1NU1 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
22 3H1J 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
23 1BE3 1 A CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
24 4U3F 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
25 4D6T 1 A, N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
26 1QCR 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
27 3L73 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
28 3H1H 1 A, N UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL 9031 1.10.2.2 | Details
29 3L72 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
30 3H1K 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
31 1BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
32 3H1L 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
33 5NMI 1 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
34 3H1I 1 A, N UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL 9031 1.10.2.2 | Details
35 4D6U 1 A CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
36 4D6U 10 N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
37 1BGY 1 A, M CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
38 2BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
39 3CWB 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031
40 3BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
41 5XTE 11 L, Y Cytochrome b-c1 complex subunit 1, mitochondrial 9606
42 5XTH 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
43 5XTI 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
44 5LUF 1 c, l Cytochrome b-c1 complex subunit 1, mitochondrial 9913
45 5GUP 45 5, u Cytochrome b-c1 complex subunit 1, mitochondrial 9823
46 5GPN 1 A, M Cytochrome b-c1 complex subunit 1, mitochondrial 9913
47 5J8K 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
48 5J7Y 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
49 5J4Z 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
50 2YBB 9 A, a CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913 1.10.2.2 | Details