Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 30 1198
95 % 2 33 1220 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 2 37 1057
70 % 2 54 637
50 % 2 54 688
40 % 2 54 726
30 % 3 62 625
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 23 1825
95 % 2 36 1069 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 2 36 1101
70 % 2 39 1025
50 % 2 39 1068
40 % 2 39 1083
30 % 2 39 1063
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 31 1199
95 % 2 34 1190 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 38 1100
70 % 2 55 635
50 % 2 55 686
40 % 2 55 723
30 % 2 55 728
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1200
95 % 2 29 1435 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 33 1192
70 % 2 53 638
50 % 3 61 590
40 % 3 69 479
30 % 3 69 486
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1362
95 % 2 29 1464 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1299
70 % 2 46 760
50 % 3 54 697
40 % 3 61 527
30 % 3 61 527
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1519
95 % 2 25 1777 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 31 1396
70 % 2 45 809
50 % 3 53 732
40 % 3 61 536
30 % 3 61 539
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 29 1185
95 % 2 33 1144 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 36 1103
70 % 2 53 633
50 % 2 53 685
40 % 2 53 722
30 % 2 53 725
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 28 1221
95 % 2 33 1145 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 36 1099
70 % 2 39 1023
50 % 2 53 681
40 % 2 53 718
30 % 2 53 723
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1721
95 % 2 30 1382 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 44 770
70 % 2 52 646
50 % 2 52 693
40 % 2 52 730
30 % 2 52 736
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36166
95 % 2 16 3070 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2742
70 % 2 17 2725
50 % 2 19 2383
40 % 2 19 2349
30 % 2 19 2201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 1 A, N Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
2 1PPJ 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
3 1PP9 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
4 2FYU 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial Core1 9913 1.10.2.2 | Details
5 1NTM 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
6 1L0L 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
7 1NTK 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
8 1SQX 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
9 5KLV 1 A Cytochrome b-c1 complex subunit 1, mitochondrial 9913
10 1NTZ 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
11 1SQV 1 A Ubiquinol-cytochrome c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
12 1SQB 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
13 1L0N 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
14 5OKD 1 A Cytochrome b-c1 complex subunit 1, mitochondrial 9913
15 3TGU 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
16 3L75 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
17 1SQP 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
18 3L71 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
19 3L74 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
20 1SQQ 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
21 3L70 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
22 1NU1 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
23 3H1J 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
24 1BE3 1 A CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
25 4U3F 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
26 4D6T 1 A, N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
27 1QCR 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
28 3L73 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
29 3H1H 1 A, N UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL 9031 1.10.2.2 | Details
30 3L72 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
31 3H1K 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
32 1BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
33 3H1L 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
34 5NMI 1 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
35 3H1I 1 A, N UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL 9031 1.10.2.2 | Details
36 4D6U 1 A CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
37 4D6U 10 N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
38 1BGY 1 A, M CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
39 2BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
40 3CWB 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031
41 3BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
42 6FO6 2 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
43 6FO0 1 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
44 6FO2 1 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
45 5XTE 11 L, Y Cytochrome b-c1 complex subunit 1, mitochondrial 9606
46 5XTH 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
47 5XTI 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
48 5LUF 1 c, l Cytochrome b-c1 complex subunit 1, mitochondrial 9913
49 5GUP 45 5, u Cytochrome b-c1 complex subunit 1, mitochondrial 9823
50 5GPN 1 A, M Cytochrome b-c1 complex subunit 1, mitochondrial 9913
51 5J8K 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
52 5J7Y 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
53 5J4Z 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
54 2YBB 9 A, a CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913 1.10.2.2 | Details