Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1241
95 % 2 29 1285 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 33 1081
70 % 2 50 642
50 % 2 50 688
40 % 2 50 717
30 % 3 58 606
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 1008
95 % 2 32 1146 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.3
PDBFlex
90 % 2 32 1173
70 % 2 49 659
50 % 2 49 703
40 % 2 49 728
30 % 2 49 727
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1242
95 % 2 30 1286 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1154
70 % 2 51 643
50 % 2 51 689
40 % 2 51 718
30 % 2 51 716
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1163
95 % 2 25 1563 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1241
70 % 2 49 645
50 % 3 57 584
40 % 3 65 453
30 % 3 65 451
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1041
95 % 2 29 1296 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 32 1137
70 % 2 46 697
50 % 3 54 620
40 % 3 54 656
30 % 3 62 470
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1672
95 % 2 24 1675 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 30 1292
70 % 2 44 760
50 % 3 52 671
40 % 3 60 496
30 % 3 60 496
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1367
95 % 2 29 1223 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1170
70 % 2 49 657
50 % 2 49 699
40 % 2 49 725
30 % 2 49 725
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1231
95 % 2 29 1224 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 2 32 1172
70 % 2 35 1075
50 % 2 49 702
40 % 2 49 727
30 % 2 49 726
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1637
95 % 2 30 1225 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 2 44 707
70 % 2 48 667
50 % 2 48 712
40 % 2 48 738
30 % 2 48 737
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48614
95 % 2 16 2908 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2697
70 % 2 17 2682
50 % 2 19 2187
40 % 2 19 2184
30 % 2 19 2083

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 1 A, N Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
2 1PPJ 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
3 1PP9 1 A, N Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
4 2FYU 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial Core1 9913 1.10.2.2 | Details
5 1NTM 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
6 1L0L 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
7 1NTK 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
8 1SQX 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
9 5KLV 1 A Cytochrome b-c1 complex subunit 1, mitochondrial 9913
10 1NTZ 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
11 1SQV 1 A Ubiquinol-cytochrome c reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
12 1SQB 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
13 1L0N 1 A UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I 9913 1.10.2.2 | Details
14 3TGU 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
15 3L75 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
16 1SQP 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
17 3L71 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
18 3L74 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
19 1SQQ 1 A Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor core protein 1 9913 1.10.2.2 | Details
20 3L70 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
21 1NU1 1 A Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial 9913 1.10.2.2 | Details
22 3H1J 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
23 1BE3 1 A CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
24 4U3F 1 A, N Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i 9031 1.10.2.2 | Details
25 4D6T 1 A, N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
26 1QCR 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 1.10.2.2 | Details
27 3L73 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
28 3H1H 1 A, N UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL 9031 1.10.2.2 | Details
29 3L72 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
30 3H1K 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
31 1BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 1.10.2.2 | Details
32 3H1L 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031 1.10.2.2 | Details
33 5NMI 1 A, N Cytochrome b-c1 complex subunit 1, mitochondrial 9913
34 3H1I 1 A, N UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL 9031 1.10.2.2 | Details
35 4D6U 1 A CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
36 4D6U 10 N CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913
37 1BGY 1 A, M CYTOCHROME BC1 COMPLEX 9913 1.10.2.2 | Details
38 2BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 1.10.2.2 | Details
39 3CWB 1 A, N MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I 9031
40 3BCC 1 A UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 1.10.2.2 | Details
41 5XTE 11 L, Y Cytochrome b-c1 complex subunit 1, mitochondrial 9606
42 5XTH 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
43 5XTI 68 AL, AY Cytochrome b-c1 complex subunit 1, mitochondrial 9606
44 5LUF 1 c, l Cytochrome b-c1 complex subunit 1, mitochondrial 9913
45 5GUP 45 5, u Cytochrome b-c1 complex subunit 1, mitochondrial 9823
46 5GPN 1 A, M Cytochrome b-c1 complex subunit 1, mitochondrial 9913
47 5J8K 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
48 5J7Y 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
49 5J4Z 51 AA, AL COMPLEX III SUBUNIT 1 / CORE 1 9940
50 2YBB 9 A, a CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL 9913 1.10.2.2 | Details