Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 22 1324
95 % 2 27 1323
90 % 2 27 1348
70 % 2 44 691
50 % 2 44 740
40 % 2 44 781
30 % 3 52 660
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 1026
95 % 2 29 1254
90 % 2 29 1282
70 % 2 43 715
50 % 2 43 764
40 % 2 43 796
30 % 2 43 793
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 23 1325
95 % 2 28 1324
90 % 2 31 1237
70 % 2 45 692
50 % 2 45 741
40 % 2 45 782
30 % 2 45 780
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 23 1206
95 % 2 23 1652
90 % 2 26 1350
70 % 2 43 693
50 % 3 51 623
40 % 3 59 464
30 % 3 59 458
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 1070
95 % 2 27 1330
90 % 2 27 1356
70 % 2 41 746
50 % 3 49 649
40 % 3 49 689
30 % 3 57 472
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1495
95 % 2 24 1535
90 % 2 27 1425
70 % 2 41 768
50 % 3 49 662
40 % 3 57 477
30 % 3 57 478
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1351
95 % 2 26 1339
90 % 2 29 1277
70 % 2 43 708
50 % 2 43 757
40 % 2 43 789
30 % 2 43 786
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 22 1313
95 % 2 26 1343
90 % 2 29 1281
70 % 2 29 1316
50 % 2 43 761
40 % 2 43 793
30 % 2 43 790
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 1599
95 % 2 23 1840
90 % 2 37 849
70 % 2 39 821
50 % 2 39 865
40 % 2 39 890
30 % 2 39 875
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45064
95 % 2 15 3005
90 % 2 15 3045
70 % 2 15 3019
50 % 2 17 2422
40 % 2 17 2392
30 % 2 17 2257

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.