Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 22 1299
95 % 2 27 1313
90 % 2 27 1338
70 % 2 44 681
50 % 2 44 734
40 % 2 44 775
30 % 3 52 655
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 1010
95 % 2 29 1244
90 % 2 29 1271
70 % 2 43 710
50 % 2 43 756
40 % 2 43 786
30 % 2 43 787
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 23 1300
95 % 2 28 1314
90 % 2 31 1227
70 % 2 45 682
50 % 2 45 735
40 % 2 45 776
30 % 2 45 777
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 23 1190
95 % 2 23 1631
90 % 2 26 1340
70 % 2 43 683
50 % 3 51 615
40 % 3 59 456
30 % 3 59 449
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 1050
95 % 2 27 1320
90 % 2 27 1347
70 % 2 41 739
50 % 3 49 643
40 % 3 49 685
30 % 3 57 464
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1474
95 % 2 24 1519
90 % 2 27 1413
70 % 2 41 760
50 % 3 49 655
40 % 3 57 471
30 % 3 57 469
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1328
95 % 2 26 1329
90 % 2 29 1267
70 % 2 43 703
50 % 2 43 751
40 % 2 43 781
30 % 2 43 782
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 22 1287
95 % 2 26 1333
90 % 2 29 1270
70 % 2 29 1304
50 % 2 43 755
40 % 2 43 785
30 % 2 43 786
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 1579
95 % 2 23 1825
90 % 2 37 837
70 % 2 39 808
50 % 2 39 850
40 % 2 39 873
30 % 2 39 864
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44618
95 % 2 15 2987
90 % 2 15 3029
70 % 2 15 3006
50 % 2 17 2401
40 % 2 17 2378
30 % 2 17 2245

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.