Sequence Similarity Clusters for the Entities in PDB 1PPJ

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1188
95 % 2 29 1250 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 2 30 1194
70 % 2 47 674
50 % 2 47 727
40 % 2 47 758
30 % 3 55 632
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 27 964
95 % 2 32 1111 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.2
PDBFlex
90 % 2 32 1134
70 % 2 46 696
50 % 2 46 744
40 % 2 46 773
30 % 2 46 767
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1189
95 % 2 30 1251 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 2 34 1114
70 % 2 48 675
50 % 2 48 728
40 % 2 48 759
30 % 2 48 754
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 25 1113
95 % 2 25 1511 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 2 29 1200
70 % 2 46 676
50 % 3 54 609
40 % 3 62 458
30 % 3 62 459
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1001
95 % 2 29 1260 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 2 29 1288
70 % 2 43 752
50 % 3 51 654
40 % 3 51 685
30 % 3 59 479
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1606
95 % 2 24 1622 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 2 27 1512
70 % 2 41 833
50 % 3 49 720
40 % 3 57 498
30 % 3 57 499
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 1310
95 % 2 29 1181 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 32 1131
70 % 2 46 691
50 % 2 46 741
40 % 2 46 770
30 % 2 46 764
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1174
95 % 2 29 1184 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 2 32 1133
70 % 2 32 1164
50 % 2 46 742
40 % 2 46 772
30 % 2 46 766
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 1575
95 % 2 24 1778 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 2 38 872
70 % 2 42 792
50 % 2 42 838
40 % 2 42 868
30 % 2 42 854
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47049
95 % 2 16 2808 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 2 17 2604
70 % 2 17 2588
50 % 2 19 2119
40 % 2 19 2109
30 % 2 19 2023

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.