Sequence Similarity Clusters for the Entities in PDB 1PPF

Entity #1 | Chains: E
HUMAN LEUKOCYTE ELASTASE protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 19 2594
95 % 4 19 2913 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 19 2973
70 % 4 19 2933
50 % 4 20 2413
40 % 676 1885 4
30 % 677 1899 7
Entity #2 | Chains: I
TURKEY OVOMUCOID INHIBITOR (OMTKY3) protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 6501
95 % 23 42 1297 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.4
PDBFlex
90 % 23 42 1318
70 % 24 44 1202
50 % 24 47 1182
40 % 24 48 1166
30 % 25 59 953

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures