Sequence Similarity Clusters for the Entities in PDB 1PPF

Entity #1 | Chains: E
HUMAN LEUKOCYTE ELASTASE protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 2612
95 % 4 19 2934 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 19 2977
70 % 4 19 2940
50 % 4 20 2419
40 % 670 1863 4
30 % 672 1885 6
Entity #2 | Chains: I
TURKEY OVOMUCOID INHIBITOR (OMTKY3) protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 7112
95 % 23 42 1263 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.4
PDBFlex
90 % 24 44 1164
70 % 24 44 1190
50 % 24 47 1161
40 % 24 48 1158
30 % 24 49 1111

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures