Sequence Similarity Clusters for the Entities in PDB 1PPF

Entity #1 | Chains: E
HUMAN LEUKOCYTE ELASTASE protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 2438
95 % 4 19 2756 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 19 2799
70 % 4 19 2769
50 % 4 20 2259
40 % 620 1682 4
30 % 650 1831 6
Entity #2 | Chains: I
TURKEY OVOMUCOID INHIBITOR (OMTKY3) protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 6692
95 % 23 42 1185 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.4
PDBFlex
90 % 24 44 1090
70 % 24 44 1132
50 % 24 47 1099
40 % 24 48 1100
30 % 24 49 1053

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.