Sequence Similarity Clusters for the Entities in PDB 1PPF

Entity #1 | Chains: E
HUMAN LEUKOCYTE ELASTASE protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 2530
95 % 4 19 2846 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 19 2891
70 % 4 19 2855
50 % 4 20 2321
40 % 622 1698 4
30 % 652 1848 6
Entity #2 | Chains: I
TURKEY OVOMUCOID INHIBITOR (OMTKY3) protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 6895
95 % 23 42 1220 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.4
PDBFlex
90 % 24 44 1125
70 % 24 44 1163
50 % 24 47 1130
40 % 24 48 1128
30 % 24 49 1087

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures