Sequence Similarity Clusters for the Entities in PDB 1PPF

Entity #1 | Chains: E
HUMAN LEUKOCYTE ELASTASE protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 2578
95 % 4 19 2889 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 4 19 2931
70 % 4 19 2898
50 % 4 20 2374
40 % 638 1720 4
30 % 668 1870 6
Entity #2 | Chains: I
TURKEY OVOMUCOID INHIBITOR (OMTKY3) protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 7006
95 % 23 42 1245 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.4
PDBFlex
90 % 24 44 1140
70 % 24 44 1176
50 % 24 47 1144
40 % 24 48 1143
30 % 24 49 1097

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures